(Q36102489)

12 August 2017

Estimating species richness using environmental DNA. (English)

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12 August 2017

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7

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12 August 2017

Yiyuan Li

4

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Patrick D Shirey

object named as

Patrick D Shirey

10

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Christopher L. Jerde

2

object named as

Christopher L Jerde

0 references

Michael E. Pfrender

11

object named as

Michael E Pfrender

1 reference

12 August 2017

8

Andrew R Mahon

1 reference

12 August 2017

12

David M Lodge

1 reference

12 August 2017

13

Gary A Lamberti

1 reference

12 August 2017

6

Cameron R Turner

1 reference

12 August 2017

Brett P Olds

1

1 reference

12 August 2017

Mark A Renshaw

3

1 reference

12 August 2017

Nathan T Evans

5

1 reference

12 August 2017

Michael A Brueseke

9

1 reference

12 August 2017

30 May 2016

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12 August 2017

13

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based on heuristic

inferred from page(s)

published in

Ecology and Evolution

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12 August 2017

6

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12 August 2017

12

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12 August 2017

4214-4226

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describes a project that uses

12 August 2017

1 reference

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

obitools: a unix-inspired software package for DNA metabarcoding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

From benchtop to desktop: important considerations when designing amplicon sequencing workflows

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Trimmomatic: a flexible trimmer for Illumina sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Transport distance of invertebrate environmental DNA in a natural river

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Environmental conditions influence eDNA persistence in aquatic systems.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

UPARSE: highly accurate OTU sequences from microbial amplicon reads

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

nhmmer: DNA homology search with profile HMMs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Monitoring endangered freshwater biodiversity using environmental DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Biodiversity and ecosystem services: a multilayered relationship

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Persistence of environmental DNA in freshwater ecosystems

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Global threats to human water security and river biodiversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Search and clustering orders of magnitude faster than BLAST

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

An in silico approach for the evaluation of DNA barcodes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

A new bioinformatics analysis tools framework at EMBL-EBI.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Global Biodiversity: Indicators of Recent Declines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Fast phylogenetic DNA barcoding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Interactive effects of habitat modification and species invasion on native species decline

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Sufficient sampling for asymptotic minimum species richness estimators

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Parsing ecological signal from noise in next generation amplicon sequencing.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

Statistical assignment of DNA sequences using Bayesian phylogenetics

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972244

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

23 September 2018

1 reference

Meta-genomic surveillance of invasive species in the bait trade

21 January 2018

1 reference

Freshwater biodiversity conservation: recent progress and future challenges

21 January 2018

1 reference

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

21 January 2018

1 reference

The Value of Biodiversity in Reserve Selection: Representation, Species Weighting, and Benefit Functions

21 January 2018

1 reference

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27516876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/ECE3.2186

1 reference

release_7cnkteweubh5xlvfdtpg4sjkly

12 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7cnkteweubh5xlvfdtpg4sjkly

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 August 2017

PubMed publication ID

27516876

1 reference