(Q36166697)

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Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments

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scholarly article

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Europe PubMed Central

PMC publication ID

12 August 2017

Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments (English)

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

0 references

0 references

1 reference

based on heuristic

inferred from title

Campylobacter jejuni

object named as

Campylobacter jejuni

1 reference

based on heuristic

inferred from title

Campylobacter coli

object named as

Campylobacter coli

1 reference

based on heuristic

inferred from title

Bruce M Pearson

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Peter van Baarlen

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Arnoud van Vliet

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Rogier Louwen

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

publication date

2 September 2015

1 reference

Europe PubMed Central

PMC publication ID

12 August 2017

Genome Biology and Evolution

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

7

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

2663-2679

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Use of Alignment-Free Phylogenetics for Rapid Genome Sequence-Based Typing of Helicobacter pylori Virulence Markers and Antibiotic Susceptibility

1 reference

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2 October 2017

Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice

1 reference

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2 October 2017

Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages.

1 reference

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2 October 2017

Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity

1 reference

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2 October 2017

Diversity of CRISPR loci and virulence genes in pathogenic Escherichia coli isolates from various sources

1 reference

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2 October 2017

Prevention of biofilm formation and removal of existing biofilms by extracellular DNases of Campylobacter jejuni

1 reference

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2 October 2017

Cas9 specifies functional viral targets during CRISPR-Cas adaptation.

1 reference

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2 October 2017

Bacteriophage-mediated spread of bacterial virulence genes.

1 reference

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2 October 2017

A CRISPR-Cas system enhances envelope integrity mediating antibiotic resistance and inflammasome evasion

1 reference

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2 October 2017

CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

1 reference

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2 October 2017

Classification and evolution of type II CRISPR-Cas systems

1 reference

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2 October 2017

A guide to genome engineering with programmable nucleases

1 reference

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2 October 2017

The role of CRISPR-Cas systems in virulence of pathogenic bacteria

1 reference

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2 October 2017

Comparative genomics of unintrogressed Campylobacter coli clades 2 and 3.

1 reference

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2 October 2017

Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

PATRIC, the bacterial bioinformatics database and analysis resource

1 reference

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2 October 2017

Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

A CRISPR/Cas system mediates bacterial innate immune evasion and virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Characterization of water and wildlife strains as a subgroup of Campylobacter jejuni using DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Probabilistic models for CRISPR spacer content evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Progressive genome-wide introgression in agricultural Campylobacter coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Cleavage of phage DNA by the Streptococcus thermophilus CRISPR3-Cas system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Campylobacter epidemiology: a descriptive study reviewing 1 million cases in England and Wales between 1989 and 2011.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Changes in causes of acute gastroenteritis in the United Kingdom over 15 years: microbiologic findings from 2 prospective, population-based studies of infectious intestinal disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

RNA-guided genetic silencing systems in bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Evolution and classification of the CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

BIGSdb: Scalable analysis of bacterial genome variation at the population level.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Bacteriophage resistance mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Small CRISPR RNAs guide antiviral defense in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Phage response to CRISPR-encoded resistance in Streptococcus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Clustal W and Clustal X version 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Evolutionary conservation of sequence and secondary structures in CRISPR repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

WebLogo: A Sequence Logo Generator

1 reference

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2 October 2017

Identification of genes that are associated with DNA repeats in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 October 2017

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

1 reference

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2 October 2017

Salmonella typhimurium LT2 possesses three distinct 23S rRNA intervening sequences

1 reference

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2 October 2017

Basic local alignment search tool

1 reference

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2 October 2017

Campylobacter jejuni acquire new host-derived CRISPR spacers when in association with bacteriophages harboring a CRISPR-like Cas4 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 July 2018

CRISPR-Cas: to take up DNA or not-that is the question

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 July 2018

Nucleases encoded by the integrated elements CJIE2 and CJIE4 inhibit natural transformation of Campylobacter jejuni

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4607530

2 July 2018

A DNase encoded by integrated element CJIE1 inhibits natural transformation of Campylobacter jejuni.

1 reference

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2 July 2018

Guide RNA functional modules direct Cas9 activity and orthogonality

1 reference

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23 September 2018

A combination of MLST and CRISPR typing reveals dominant Campylobacter jejuni types in organically farmed laying hens.

1 reference

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23 September 2018

MLST revisited: the gene-by-gene approach to bacterial genomics.

1 reference

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23 September 2018

A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barré syndrome.

1 reference

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23 September 2018

CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection.

1 reference

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23 September 2018

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

1 reference

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23 September 2018

Comparative analysis of CRISPR loci in lactic acid bacteria genomes.

1 reference

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23 September 2018

Convergence of Campylobacter species: implications for bacterial evolution.

1 reference

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23 September 2018

The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

1 reference

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23 September 2018

Scientific Opinion on Quantification of the risk posed by broiler meat to human campylobacteriosis in the EU

1 reference

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21 January 2018

Risk factors for indigenous Campylobacter jejuni and Campylobacter coli infections in The Netherlands: a case-control study

1 reference

https://pubmed.ncbi.nlm.nih.gov/26338188

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVV174

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26338188%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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