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CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.
scientific article published on 14 March 2013
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3737339
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26 February 2020
title
CRISPRTarget: bioinformatic prediction and analysis of crRNA targets
(English)
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Europe PubMed Central
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3737339
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26 February 2020
main subject
RNA analysis
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based on heuristic
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bioinformatics
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author
Peter Fineran
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4
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Europe PubMed Central
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3737339
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26 February 2020
Christopher Brown
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5
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3737339
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26 February 2020
Stan J. J. Brouns
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3
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Stan J J Brouns
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Europe PubMed Central
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3737339
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26 February 2020
author name string
Ambarish Biswas
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1
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3737339
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26 February 2020
Joshua N Gagnon
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2
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Europe PubMed Central
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3737339
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26 February 2020
publication date
14 March 2013
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26 February 2020
published in
RNA Biology
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3737339
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26 February 2020
volume
10
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Europe PubMed Central
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3737339
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26 February 2020
issue
5
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Europe PubMed Central
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3737339
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23492433%20AND%20SRC:MED&resulttype=core&format=json
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26 February 2020
page(s)
817-827
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3737339
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26 February 2020
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
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29 September 2017
The marine viromes of four oceanic regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
A first global analysis of plasmid encoded proteins in the ACLAME database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
A putative viral defence mechanism in archaeal cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
The silent treatment: RNAi as a defense against virus infection in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
Rotting softly and stealthily.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
Mastering seeds for genomic size nucleotide BLAST searches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
The genome of epsilon15, a serotype-converting, Group E1 Salmonella enterica-specific bacteriophage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
29 September 2017
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
27 June 2018
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
27 June 2018
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
27 June 2018
Target gene expression levels and competition between transfected and endogenous microRNAs are strong confounding factors in microRNA high-throughput experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
27 June 2018
Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
3 September 2018
Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737339
retrieved
3 September 2018
WebACT--an online companion for the Artemis Comparison Tool
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FRNA.24046
retrieved
21 January 2018
Two mobilePectobacterium atrosepticumprophages modulate virulence
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.4161%2FRNA.24046
retrieved
21 January 2018
Identifiers
DOI
10.4161/RNA.24046
1 reference
stated in
Europe PubMed Central
PMC publication ID
3737339
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23492433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 February 2020
PMC publication ID
3737339
1 reference
stated in
Europe PubMed Central
PMC publication ID
3737339
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23492433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 February 2020
PubMed publication ID
23492433
1 reference
stated in
Europe PubMed Central
PMC publication ID
3737339
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23492433%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 February 2020
ResearchGate publication ID
236047132
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