(Q36217802)

12 August 2017

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4). (English)

1 reference

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

12 August 2017

1 reference

corrigendum / erratum

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author

Natalia N. Ivanova

2

1 reference

12 August 2017

13

1 reference

12 August 2017

10

Amrita Pati

1 reference

12 August 2017

1

Marcel Huntemann

1 reference

12 August 2017

Konstantinos Mavromatis

3

object named as

Konstantinos Mavromatis

1 reference

12 August 2017

12

Victor M Markowitz

1 reference

12 August 2017

7

Ernest Szeto

1 reference

12 August 2017

8

Manoj Pillay

1 reference

12 August 2017

6

Krishnaveni Palaniappan

1 reference

12 August 2017

H James Tripp

4

1 reference

12 August 2017

David Paez-Espino

5

1 reference

12 August 2017

I-Min A Chen

9

1 reference

12 August 2017

Torben Nielsen

11

1 reference

12 August 2017

language of work or name

1 reference

26 October 2015

1 reference

Standards in genomic sciences

12 August 2017

1 reference

12 August 2017

10

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12 August 2017

86

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https://scigraph.springernature.com/pub.10.1186/s40793-015-0077-y

12 August 2017

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cites work

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

InterProScan 5: genome-scale protein function classification

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Data, information, knowledge and principle: back to metabolism in KEGG

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

IMG 4 version of the integrated microbial genomes comparative analysis system

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Improving microbial genome annotations in an integrated database context

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

The Pfam protein families database

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Accelerated Profile HMM Searches

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

SignalP 4.0: discriminating signal peptides from transmembrane regions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Search and clustering orders of magnitude faster than BLAST

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Infernal 1.0: inference of RNA alignments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

PILER-CR: fast and accurate identification of CRISPR repeats

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

CDD: a conserved domain database for interactive domain family analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Rfam: annotating non-coding RNAs in complete genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

1 October 2017

https://api.crossref.org/works/10.1186%2FS40793-015-0077-Y

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4623924

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26512311

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S40793-015-0077-Y

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

26512311

1 reference