(Q36254594)

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A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a

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scholarly article

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Europe PubMed Central

13 August 2017

A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a (English)

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Europe PubMed Central

13 August 2017

comparative genomics

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based on heuristic

inferred from title

Dehalococcoides mccartyi

object named as

Dehalococcoides mccartyi

1 reference

based on heuristic

inferred from title

corrigendum / erratum

Author Correction: A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a

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1

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6 June 2020

Patrick K. H. Lee

5

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6 June 2020

6

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6 June 2020

author name string

Zhiyong Shen

2

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6 June 2020

Dan Cheng

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6 June 2020

Matthew J Rogers

4

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6 June 2020

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6 November 2015

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13 August 2017

Scientific Reports

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6 June 2020

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6 June 2020

15204

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6 June 2020

https://scigraph.springernature.com/pub.10.1038/srep15204

0 references

Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Structural basis for organohalide respiration

1 reference

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30 September 2017

Control of gene expression by CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Genome sequences of two dehalogenation specialists – Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Comparative genomics of defense systems in archaea and bacteria

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30 September 2017

Review of reactive kinetic models describing reductive dechlorination of chlorinated ethenes in soil and groundwater

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains

1 reference

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30 September 2017

The conformational transition pathways of ATP-binding cassette transporter BtuCD revealed by targeted molecular dynamics simulation

1 reference

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30 September 2017

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

1 reference

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30 September 2017

CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Toxin-antitoxin systems in bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

The little bacteria that can - diversity, genomics and ecophysiology of 'Dehalococcoides' spp. in contaminated environments

1 reference

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30 September 2017

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Dead-box proteins: a family affair--active and passive players in RNP-remodeling

1 reference

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30 September 2017

Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

AMIGene: Annotation of MIcrobial Genes

1 reference

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30 September 2017

Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

The biosynthesis of adenosylcobalamin (vitamin B12)

1 reference

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30 September 2017

Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP family

1 reference

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Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis

1 reference

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30 September 2017

Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods

1 reference

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30 September 2017

Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization

1 reference

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30 September 2017

Reductive dechlorination of tetrachloroethene to ethene by a two-component enzyme pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

Reductive dechlorination of chlorinated ethenes and 1, 2-dichloroethane by "Dehalococcoides ethenogenes" 195.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

30 September 2017

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1 reference

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30 September 2017

Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

Transformation and carbon isotope fractionation of tetra- and trichloroethene to trans-dichloroethene by Dehalococcoides sp. strain CBDB1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

Tetrachloroethene conversion to ethene by a Dehalococcoides-containing enrichment culture from Bitterfeld

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

Identification and transcriptional analysis of trans-DCE-producing reductive dehalogenases in Dehalococcoides species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

An analysis of initiation codon utilization in the Domain Bacteria - concerns about the quality of bacterial genome annotation.

1 reference

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22 September 2018

Dehalococcoides' gene transcripts as quantitative bioindicators of tetrachloroethene, trichloroethene, and cis-1,2-dichloroethene dehalorespiration rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

Comparative evaluation of chloroethene dechlorination to ethene by Dehalococcoides-like microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4635342

22 September 2018

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10.1038/SREP15204

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6 June 2020

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6 June 2020

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Europe PubMed Central

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6 June 2020

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