(Q36280688)

English

Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity

scientific article

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scholarly article

1 reference

Europe PubMed Central

13 August 2017

Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity (English)

1 reference

Europe PubMed Central

13 August 2017

cluster analysis

1 reference

based on heuristic

inferred from title

author name string

Sanschagrin PC

1

1 reference

Europe PubMed Central

13 August 2017

Kuhn LA

2

1 reference

Europe PubMed Central

13 August 2017

publication date

1 October 1998

1 reference

Europe PubMed Central

13 August 2017

Protein Science

1 reference

Europe PubMed Central

13 August 2017

7

1 reference

Europe PubMed Central

13 August 2017

2054-2064

1 reference

Europe PubMed Central

13 August 2017

10

1 reference

Europe PubMed Central

13 August 2017

The role of structure in antibody cross-reactivity between peptides and folded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The molecular environment of the Na+ binding site of thrombin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Residue 225 determines the Na(+)-induced allosteric regulation of catalytic activity in serine proteases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

What makes a binding site a binding site?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

A possible involvement of solvent-induced interactions in drug design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Using buried water molecules to explore the energy landscape of proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Direct observation of protein solvation and discrete disorder with experimental crystallographic phases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Structural analysis of MHC class I molecules with bound peptide antigens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Mutagenesis supports water mediated recognition in the trp repressor-operator system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Multiple hydration layers in cubic insulin crystals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Water: now you see it, now you don't

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The role of water molecules in the structure-based design of (5-hydroxynorvaline)-2-cyclosporin: synthesis, biological activity, and crystallographic analysis with cyclophilin A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Simultaneous refinement of the structure of BPTI against NMR data measured in solution and X-ray diffraction data measured in single crystals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Computer simulation of the dynamics of hydrated protein crystals and its comparison with x-ray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Water and proteins. II. The location and dynamics of water in protein systems and its relation to their stability and properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Role of a Buried Acid Group in the Mechanism of Action of Chymotrypsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Hydration of Proteins and Polypeptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Solvation energy in protein folding and binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Crystal structure of trp repressor/operator complex at atomic resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The molecular basis of blood coagulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

1.59 A structure of trypsin at 120 K: comparison of low temperature and room temperature structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The protein C anticoagulant pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Internal water molecules and H‐bonding in biological macromolecules: A review of structural features with functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

30 September 2017

The molecular surface package

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

Buried waters and internal cavities in monomeric proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

Internal cavities and buried waters in globular proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

Solvent structure in crystals of trypsin determined by X-ray and neutron diffraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

The interdependence of protein surface topography and bound water molecules revealed by surface accessibility and fractal density measures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

29 June 2018

Analysis of solvent structure in proteins using neutron D2O-H2O solvent maps: pattern of primary and secondary hydration of trypsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143843

22 September 2018

Locating the catalytic water molecule in serine proteases

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Na+ binding site of thrombin

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of water molecules in an antibody-antigen interaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein hydration in aqueous solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Buried water in homologous serine proteases

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hydrolytic water molecule in trypsin, revealed by time-resolved Laue crystallography

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Atomic and residue hydrophilicity in the context of folded protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/9792092

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PRO.5560071002

1 reference

Europe PubMed Central

13 August 2017

1 reference

Europe PubMed Central

13 August 2017

1 reference

Europe PubMed Central

13 August 2017

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