(Q36348518)

13 August 2017

Transition-path sampling of beta-hairpin folding (English)

1 reference

PMCID

218724

13 August 2017

Transition-path sampling of β-hairpin folding (English)

1 reference

https://api.crossref.org/works/10.1073/PNAS.1534924100

protein secondary structure

17 March 2024

main subject

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

17 March 2024

protein folding

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

17 March 2024

author name string

Peter G. Bolhuis

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

17 March 2024

language of work or name

English

0 references

publication date

1 October 2003

1 reference

PMCID

218724

13 August 2017

14 October 2003

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=14523242

full work available at URL

17 March 2024

https://europepmc.org/articles/pmc218724?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

https://europepmc.org/articles/PMC218724

17 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

https://europepmc.org/articles/PMC218724?pdf=render

17 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

https://doi.org/10.1073/pnas.1534924100

17 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14523242

https://pnas.org/doi/pdf/10.1073/pnas.1534924100

17 March 2024

1 reference

https://api.crossref.org/works/10.1073/PNAS.1534924100

Proceedings of the National Academy of Sciences of the United States of America

17 March 2024

published in

1 reference

13 August 2017

100

1 reference

13 August 2017

12129-12134

1 reference

13 August 2017

21

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

The free energy landscape for beta hairpin folding in explicit water

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Reaction coordinates of biomolecular isomerization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Mechanisms and kinetics of beta-hairpin formation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Understanding beta-hairpin formation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

A statistical mechanical model for beta-hairpin kinetics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Folding dynamics and mechanism of beta-hairpin formation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

VMD: visual molecular dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Folding of protein G B1 domain studied by the conformational characterization of fragments comprising its secondary structure elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=218724

Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.

30 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Molecular dynamics simulations at constant pressure and/or temperature

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Statistical mechanics of isomerization dynamics in liquids and the transition state approximation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Beta-hairpin folding simulations in atomistic detail using an implicit solvent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Exploring the energy landscape of a beta hairpin in explicit solvent

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1534924100

Evidence of turn and salt bridge contributions to beta-hairpin stability: MD simulations of C-terminal fragment from the B1 domain of protein G

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14523242

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Annual Review of Physical Chemistry

7

54

291

2002

1 reference

https://api.crossref.org/works/10.1073/PNAS.1534924100

17 March 2024

Identifiers

1 reference

13 August 2017

0 references

1 reference

13 August 2017

1 reference

PMCID

218724