(Q36432773)

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Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community

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scholarly article

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Europe PubMed Central

PMC publication ID

14 August 2017

Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community (English)

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Europe PubMed Central

PMC publication ID

14 August 2017

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Richard H. Scheuermann

13

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Europe PubMed Central

PMC publication ID

14 August 2017

Christopher N. Larsen

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Christopher N Larsen

10

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author name string

Brett E Pickett

1

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Europe PubMed Central

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14 August 2017

Douglas S Greer

2

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Europe PubMed Central

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14 August 2017

Yun Zhang

3

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Europe PubMed Central

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14 August 2017

Lucy Stewart

4

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Europe PubMed Central

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14 August 2017

Liwei Zhou

5

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Europe PubMed Central

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14 August 2017

Guangyu Sun

6

1 reference

Europe PubMed Central

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14 August 2017

Zhiping Gu

7

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Europe PubMed Central

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14 August 2017

Sanjeev Kumar

8

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Europe PubMed Central

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14 August 2017

Sam Zaremba

9

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Europe PubMed Central

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14 August 2017

Wei Jen

11

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Europe PubMed Central

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14 August 2017

Edward B Klem

12

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Europe PubMed Central

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14 August 2017

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publication date

19 November 2012

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Europe PubMed Central

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14 August 2017

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Europe PubMed Central

PMC publication ID

14 August 2017

4

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Europe PubMed Central

PMC publication ID

14 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

3209-3226

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

copyright license

Creative Commons Attribution 4.0 International

19 November 2012

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April 2022 Public Data File from Crossref

copyright status

0 references

Primer3--new capabilities and interfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Immune epitope database analysis resource

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Reorganizing the protein space at the Universal Protein Resource (UniProt)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

The Gene Ontology: enhancements for 2011

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

ViPR: an open bioinformatics database and analysis resource for virology research.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

The RCSB Protein Data Bank: redesigned web site and web services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Antibody binding site mapping of SARS-CoV spike protein receptor-binding domain by a combination of yeast surface display and phage peptide library screening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

phyloXML: XML for evolutionary biology and comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

A review of studies on animal reservoirs of the SARS coronavirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Animal origins of the severe acute respiratory syndrome coronavirus: insight from ACE2-S-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Severe acute respiratory syndrome (SARS): a year in review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

ProtTest: selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Receptor-binding domain of SARS-CoV spike protein induces highly potent neutralizing antibodies: implication for developing subunit vaccine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

WebLogo: A Sequence Logo Generator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Control measures for severe acute respiratory syndrome (SARS) in Taiwan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Aetiology: Koch's postulates fulfilled for SARS virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

The Genome sequence of the SARS-associated coronavirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Coronavirus as a possible cause of severe acute respiratory syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

InterProScan--an integration platform for the signature-recognition methods in InterPro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

ATV: display and manipulation of annotated phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Dengue Epidemic in Southern Vietnam, 1998

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Outbreak of West Nile-like viral encephalitis--New York, 1999.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

30 September 2017

Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

28 June 2018

Sequence file format conversion with command-line readseq.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

21 September 2018

Jmol– a paradigm shift in crystallographic visualization

1 reference

https://api.crossref.org/works/10.3390%2FV4113209

21 January 2018

Severe acute respiratory syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3509690

21 October 2018

From the Centers for Disease Control and Prevention. Severe acute respiratory syndrome--Taiwan, 2003

1 reference

https://pubmed.ncbi.nlm.nih.gov/23202522

12 December 2020

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Identifiers

10.3390/V4113209

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

ResearchGate publication ID

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