(Q36434552)

14 August 2017

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants (English)

1 reference

14 August 2017

Wen-Chi Chang

10

0 references

author name string

Chi-Nga Chow

1

1 reference

14 August 2017

Han-Qin Zheng

2

1 reference

14 August 2017

Nai-Yun Wu

3

1 reference

14 August 2017

Chia-Hung Chien

4

1 reference

14 August 2017

Hsien-Da Huang

5

1 reference

14 August 2017

Tzong-Yi Lee

6

1 reference

14 August 2017

Yi-Fan Chiang-Hsieh

7

1 reference

14 August 2017

Ping-Fu Hou

8

1 reference

14 August 2017

Tien-Yi Yang

9

1 reference

14 August 2017

language of work or name

English

0 references

publication date

17 October 2015

1 reference

14 August 2017

Nucleic Acids Research

1 reference

14 August 2017

44

1 reference

14 August 2017

D1

1 reference

14 August 2017

D1154-60

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

14 August 2017

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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The BioGRID interaction database: 2015 update

30 September 2017

1 reference

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UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

30 September 2017

1 reference

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A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana.

30 September 2017

1 reference

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UniProt: a hub for protein information

30 September 2017

1 reference

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Determination and inference of eukaryotic transcription factor sequence specificity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

DNA-binding specificities of plant transcription factors and their potential to define target genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

30 September 2017

1 reference

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Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics

30 September 2017

1 reference

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RiceXPro version 3.0: expanding the informatics resource for rice transcriptome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

30 September 2017

1 reference

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MINT, the molecular interaction database: 2012 update

30 September 2017

1 reference

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MaizeGDB: curation and outreach go hand-in-hand

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

PAIR: the predicted Arabidopsis interactome resource

30 September 2017

1 reference

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Experimental strategies for studying transcription factor-DNA binding specificities

30 September 2017

1 reference

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Cytoscape Web: an interactive web-based network browser

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The role of WRKY transcription factors in plant immunity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

Quantifying similarity between motifs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

MATCH: A tool for searching transcription factor binding sites in DNA sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

TRANSFAC: transcriptional regulation, from patterns to profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

Plant responses to stresses: Role of ascorbate peroxidase in the antioxidant protection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702776

AthaMap Web Tools for the Analysis of Transcriptional and Posttranscriptional Regulation of Gene Expression in Arabidopsis thaliana

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26476450

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV1035

1 reference

journals/nar/ChowZWCHLCHYC16

14 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 August 2017

1 reference