(Q34832146)

4 August 2017

title

Experimental strategies for studying transcription factor-DNA binding specificities (English)

1 reference

4 August 2017

Sebastian J Maerkl

2

0 references

author name string

Marcel Geertz

series ordinal

1

1 reference

4 August 2017

publication date

23 September 2010

1 reference

Briefings in functional genomics

4 August 2017

published in

1 reference

4 August 2017

volume

9

1 reference

4 August 2017

issue

5-6

1 reference

4 August 2017

page(s)

362-373

1 reference

Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

4 August 2017

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8 July 2018

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8 July 2018

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8 July 2018

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Diversity and complexity in DNA recognition by transcription factors

8 July 2018

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Zinc-finger-based artificial transcription factors and their applications

8 July 2018

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8 July 2018

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

8 July 2018

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Nucleosome positioning and gene regulation: advances through genomics

8 July 2018

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Purification of proteins associated with specific genomic Loci

8 July 2018

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

8 July 2018

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An in vitro microfluidic approach to generating protein-interaction networks

8 July 2018

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Analysis of combinatorial cis-regulation in synthetic and genomic promoters

8 July 2018

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Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis

8 July 2018

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A feature-based approach to modeling protein-DNA interactions

8 July 2018

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Nuclear architecture and gene regulation

8 July 2018

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Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

8 July 2018

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ChIPping away at gene regulation

8 July 2018

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Rational design, selection and specificity of artificial transcription factors (ATFs): the influence of chromatin in target gene regulation

8 July 2018

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A survey of DNA motif finding algorithms

8 July 2018

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8 July 2018

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Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method

8 July 2018

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SELEX experiments: new prospects, applications and data analysis in inferring regulatory pathways

8 July 2018

1 reference

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Predictive modeling of genome-wide mRNA expression: from modules to molecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Analysis of protein-DNA interactions using surface plasmon resonance

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

A systems approach to measuring the binding energy landscapes of transcription factors

8 July 2018

1 reference

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Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques

8 July 2018

1 reference

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Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.

8 July 2018

1 reference

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

8 July 2018

Specificity by design

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Extensive low-affinity transcriptional interactions in the yeast genome

8 July 2018

1 reference

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Defining the sequence-recognition profile of DNA-binding molecules

8 July 2018

1 reference

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Single-nucleosome mapping of histone modifications in S. cerevisiae

8 July 2018

1 reference

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Transcriptional regulation by the numbers: models.

8 July 2018

1 reference

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DIP-chip: rapid and accurate determination of DNA-binding specificity.

8 July 2018

1 reference

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Assessing computational tools for the discovery of transcription factor binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays.

8 July 2018

1 reference

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8 July 2018

1 reference

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8 July 2018

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

8 July 2018

1 reference

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

8 July 2018

1 reference

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

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8 July 2018

1 reference

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8 July 2018

1 reference

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An overview of the structures of protein-DNA complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

8 July 2018

1 reference

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Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation

8 July 2018

1 reference

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Roles of phosphorylation sites in regulating activity of the transcription factor Pho4.

8 July 2018

1 reference

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8 July 2018

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TRANSFAC: a database on transcription factors and their DNA binding sites

8 July 2018

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

8 July 2018

1 reference

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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3080775

Predicting gene expression from sequence

8 July 2018

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Control of the Escherichia coli rrnB P1 promoter strength by ppGpp

21 January 2018

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Microfluidic large-scale integration

21 January 2018

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Repertoire selection of variant single-chain Cro: toward directed DNA-binding specificity of helix-turn-helix proteins

21 January 2018

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Score distributions for simultaneous matching to multiple motifs

21 January 2018

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

21 January 2018

1 reference

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Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA.

21 January 2018

1 reference

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Biospecific interaction analysis using surface plasmon resonance detection applied to kinetic, binding site and concentration analysis

26 October 2018

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Functional dissection of the yeast Cyc8–Tupl transcriptional co-repressor complex

21 January 2018

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ChIC and ChEC; genomic mapping of chromatin proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20864494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BFGP/ELQ023

1 reference

4 August 2017

1 reference

4 August 2017

1 reference