(Q36458847)

14 August 2017

The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex (English)

1 reference

14 August 2017

4

Irina Artsimovitch

0 references

author name string

Anastasiya Sevostyanova

series ordinal

1

1 reference

14 August 2017

Vladimir Svetlov

series ordinal

2

1 reference

14 August 2017

Dmitry G Vassylyev

series ordinal

3

1 reference

14 August 2017

language of work or name

English

0 references

publication date

14 January 2008

1 reference

14 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

14 August 2017

105

1 reference

14 August 2017

3

1 reference

14 August 2017

865-870

1 reference

describes a project that uses

14 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2242686/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Structural basis for transcription elongation by bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Sigma and RNA polymerase: an on-again, off-again relationship?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Bacterial transcription elongation factors: new insights into molecular mechanism of action

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Association of RNA polymerase with transcribed regions in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Replication protein A interacts with AID to promote deamination of somatic hypermutation targets

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Highly divergent RfaH orthologs from pathogenic proteobacteria can substitute for Escherichia coli RfaH both in vivo and in vitro

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Tethering sigma70 to RNA polymerase reveals high in vivo activity of sigma factors and sigma70-dependent pausing at promoter-distal locations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Antitermination by bacteriophage lambda Q protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Allosteric control of the RNA polymerase by the elongation factor RfaH

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Region 1.2 of the RNA polymerase sigma subunit controls recognition of the -10 promoter element

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Changes in conserved region 2 of Escherichia coli sigma 70 affecting promoter recognition

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Mutational analysis of beta '260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase.

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

Biochemistry. RNA polymerase, a scrunching machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708432105

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242686

Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription

21 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18195372

12 December 2020

inferred from PubMed ID database lookup

The phage lambda gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18195372

12 December 2020

inferred from PubMed ID database lookup

Promoter recognition and discrimination by EsigmaS RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18195372

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0708432105

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

18195372

1 reference