(Q36466905)

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Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana.

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2 March 2020

Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana (English)

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2 March 2020

Arabidopsis thaliana

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2 March 2020

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2 March 2020

author name string

Yizhen Wan

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2 March 2020

Dayong Zhang

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2 March 2020

Xiaohong Zhu

5

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2 March 2020

Zegang Wang

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2 March 2020

Zhaobo Lang

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2 March 2020

publication date

14 December 2015

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2 March 2020

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2 March 2020

16

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2 March 2020

272

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2 March 2020

https://scigraph.springernature.com/pub.10.1186/s13059-015-0839-2

0 references

Yeast m6A Methylated mRNAs Are Enriched on Translating Ribosomes during Meiosis, and under Rapamycin Treatment

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30 September 2017

Unique features of the m6A methylome in Arabidopsis thaliana.

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The dynamic epitranscriptome: N6-methyladenosine and gene expression control

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Gene expression regulation mediated through reversible m⁶A RNA methylation

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N6-methyladenosine-dependent regulation of messenger RNA stability

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RNA-methylation-dependent RNA processing controls the speed of the circadian clock

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N6-methyl-adenosine (m6A) in RNA: an old modification with a novel epigenetic function

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1 reference

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1 reference

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Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

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1 reference

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NO VEIN mediates auxin-dependent specification and patterning in the Arabidopsis embryo, shoot, and root

1 reference

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Arabidopsis thaliana PRP40s are RNA polymerase II C-terminal domain-associating proteins

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28 June 2018

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21 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Replication factor C1 (RFC1) is required for double-strand break repair during meiotic homologous recombination in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The GCN2 homologue in Arabidopsis thaliana interacts with uncharged tRNA and uses Arabidopsis eIF2α molecules as direct substrates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Arabidopsis KEA2, a homolog of bacterial KefC, encodes a K(+)/H(+) antiporter with a chloroplast transit peptide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

AtACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Osmosensitive changes of carbohydrate metabolism in response to cellulose biosynthesis inhibition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Endoplasmic reticulum stress activates the expression of a sub-group of protein disulfide isomerase genes and AtbZIP60 modulates the response in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The GRV2/RME-8 protein of Arabidopsis functions in the late endocytic pathway and is required for vacuolar membrane flow

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Insertion of the plant photosystem I subunit G into the thylakoid membrane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Learning the lipid language of plant signalling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

The delayed leaf senescence mutants of Arabidopsis, ore1, ore3, and ore9 are tolerant to oxidative stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

LAF3, a novel factor required for normal phytochrome A signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Biochemical and molecular characterization of a hydroxyjasmonate sulfotransferase from Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

A homologue of the yeast HOP1 gene is inactivated in the Arabidopsis meiotic mutant asy1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4714525

21 September 2018

JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0839-2

21 January 2018

Minor antenna proteins CP24 and CP26 affect the interactions between photosystem II subunits and the electron transport rate in grana membranes of Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0839-2

21 January 2018

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytokinins Regulate a Bidirectional Phosphorelay Network in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis mediator complex subunit16 positively regulates salicylate-mediated systemic acquired resistance and jasmonate/ethylene-induced defense pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis sensor His-kinase, AHk4, can respond to cytokinins

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The AtNACK1/HINKEL and STUD/TETRASPORE/AtNACK2 genes, which encode functionally redundant kinesins, are essential for cytokinesis in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of plant CBP/p300-like genes in the regulation of flowering time

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence specificity of mRNA N6-adenosine methyltransferase

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of COV1, a gene involved in the regulation of vascular patterning in the stem of Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Loss-of-Susceptibility Mutants of Arabidopsis thaliana Reveal an Essential Role for eIF(iso)4E during Potyvirus Infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of components of the eukaryotic vesicle transport system reveals a common origin of adaptor protein complexes 1, 2, and 3 and the F subcomplex of the coatomer COPI

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26667818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S13059-015-0839-2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26667818%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26667818%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26667818%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

ResearchGate publication ID

0 references

Sitelinks

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