(Q36475389)

14 August 2017

1 reference

title

Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps (English)

1 reference

cryogenic electron microscopy

14 August 2017

main subject

0 references

2

Joachim Frank

0 references

author name string

Kakoli Mitra

series ordinal

1

1 reference

14 August 2017

publication date

1 January 2006

1 reference

Annual Review of Biophysics and Biomolecular Structure

14 August 2017

published in

1 reference

14 August 2017

volume

35

1 reference

14 August 2017

page(s)

299-317

1 reference

Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

14 August 2017

cites work

1 reference

11 October 2022

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11 October 2022

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The path of messenger RNA through the ribosome

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Transport between the cell nucleus and the cytoplasm

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Ribosomal RNA Kink-turn Motif—A Flexible Molecular Hinge

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11 October 2022

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Three-dimensional cryoelectron microscopy of ribosomes

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Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs

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11 October 2022

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Structure of the 30S ribosomal subunit

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11 October 2022

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

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Crystal structure of the ribosome at 5.5 A resolution

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11 October 2022

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Docking structures of domains into maps from cryo-electron microscopy using local correlation

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11 October 2022

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The ribosomal exit tunnel functions as a discriminating gate

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11 October 2022

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Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

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11 October 2022

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A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome

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11 October 2022

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Novel roles for classical factors at the interface between translation termination and initiation

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

A ratchet-like inter-subunit reorganization of the ribosome during translocation

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11 October 2022

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X-ray crystal structures of 70S ribosome functional complexes

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11 October 2022

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Direct Visualization of A-, P-, and E-Site Transfer RNAs in the Escherichia coli Ribosome

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11 October 2022

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Quantitative fitting of atomic models into observed densities derived by electron microscopy.

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11 October 2022

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Fast 3D motif search of EM density maps using a locally normalized cross-correlation function

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11 October 2022

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

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11 October 2022

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Annealing in crystallography: a powerful optimization tool

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

X-ray structure of a protein-conducting channel

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Solution NMR-derived global fold of a monomeric 82-kDa enzyme

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11 October 2022

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Conformational change of proteins arising from normal mode calculations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Regulatory nascent peptides in the ribosomal tunnel

1 reference

11 October 2022

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Fitting of high-resolution structures into electron microscopy reconstruction images.

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11 October 2022

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Unusual resistance of peptidyl transferase to protein extraction procedures

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11 October 2022

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Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy.

1 reference

11 October 2022

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Reconstruction of three dimensional structures from electron micrographs

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11 October 2022

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Cryo-electron microscopy of viruses

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11 October 2022

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Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy

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11 October 2022

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Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

1 reference

11 October 2022

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Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: the distribution of ribosomal RNA.

1 reference

11 October 2022

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Single-particle electron cryo-microscopy: towards atomic resolution.

1 reference

11 October 2022

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Structures of the bacterial ribosome at 3.5 A resolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Peptidyl-tRNA regulates the GTPase activity of translation factors

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Architecture of prokaryotic ribosomes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Conformational flexibility of bacterial RNA polymerase.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Docking of atomic models into reconstructions from electron microscopy

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Visualization of elongation factor Tu on the Escherichia coli ribosome.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Locking and unlocking of ribosomal motions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Structure of the E. coli protein-conducting channel bound to a translating ribosome

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Ribosome structure and the mechanism of translation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

The kink-turn: a new RNA secondary structure motif

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

A negative staining method for high resolution electron microscopy of viruses

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Escherichia coli 70 S ribosome at 15 A resolution by cryo-electron microscopy: localization of fMet-tRNAfMet and fitting of L1 protein

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Low resolution meets high: towards a resolution continuum from cells to atoms

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Making sense of mimic in translation termination

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Solution structure of the E. coli 70S ribosome at 11.5 A resolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Intermediate states in the movement of transfer RNA in the ribosome

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Dynamics of a small globular protein in terms of low-frequency vibrational modes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Domains of initiator tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Real space refinement of acto-myosin structures from sectioned muscle.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Refinement of protein dynamic structure: normal mode refinement

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Variational calculation of the normal modes of a large macromolecule: methods and some initial results

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOPHYS.35.040405.101950

Identifiers

DOI

10.1146/ANNUREV.BIOPHYS.35.040405.101950

1 reference

release_46iuoxpp7jh7tofuw5jqux5zey

14 August 2017

Fatcat ID

1 reference

https://api.fatcat.wiki/v0/release/46iuoxpp7jh7tofuw5jqux5zey

Fatcat

reference URL

mapped directly with Wikidata item

24 November 2022

based on heuristic

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