(Q36497357)

14 August 2017

Discovering gapped binding sites of yeast transcription factors (English)

1 reference

14 August 2017

Chien-Yu Chen

1

0 references

Wen-Hsiung Li

object named as

Wen-Hsiung Li

7

0 references

author name string

Huai-Kuang Tsai

2

1 reference

14 August 2017

Chen-Ming Hsu

3

1 reference

14 August 2017

Mei-Ju May Chen

4

1 reference

14 August 2017

Hao-Geng Hung

5

1 reference

14 August 2017

Grace Tzu-Wei Huang

6

1 reference

14 August 2017

language of work or name

English

0 references

publication date

13 February 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

105

1 reference

14 August 2017

7

1 reference

14 August 2017

2527-2532

1 reference

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

SPACER: identification of cis-regulatory elements with non-contiguous critical residues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Discovering motifs in ranked lists of DNA sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Method for identifying transcription factor binding sites in yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Limitations and potentials of current motif discovery algorithms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Mining ChIP-chip data for transcription factor and cofactor binding sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

A boosting approach for motif modeling using ChIP-chip data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Assessing computational tools for the discovery of transcription factor binding sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Bipartite pattern discovery by entropy minimization-based multiple local alignment.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Transcriptional regulatory code of a eukaryotic genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Applied bioinformatics for the identification of regulatory elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Computational prediction of transcription-factor binding site locations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Conservation of regulatory elements between two species of Drosophila

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Sequencing and comparison of yeast species to identify genes and regulatory elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Transcriptional regulatory networks in Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Characterization of the ECB binding complex responsible for the M/G(1)-specific transcription of CLN3 and SWI4

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Identifying regulatory networks by combinatorial analysis of promoter elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

A statistical method for finding transcription factor binding sites.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

30 September 2017

https://api.crossref.org/works/10.1073%2FPNAS.0712188105

DNA binding sites: representation and discovery

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Regulatory element detection using correlation with expression.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2268170

Detection of generic spaced motifs using submotif pattern mining

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712188105

Efficiently finding regulatory elements using correlation with gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712188105

Identification of functional transcription factor binding sites using closely related Saccharomyces species

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712188105

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712188105

21 January 2018

Identifiers

DOI

10.1073/PNAS.0712188105

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

18272477

1 reference