(Q36509098)

14 August 2017

Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors (English)

1 reference

14 August 2017

Cody Geary

1

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author name string

Stéphanie Baudrey

series ordinal

2

1 reference

14 August 2017

Luc Jaeger

series ordinal

3

1 reference

14 August 2017

language of work or name

English

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publication date

23 December 2007

1 reference

14 August 2017

Nucleic Acids Research

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14 August 2017

36

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14 August 2017

4

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14 August 2017

1138-1152

1 reference

describes a project that uses

14 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2275092/fullTextXML

inferred from PubMed Central ID database lookup

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.

30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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Crystal structure of a self-splicing group I intron with both exons

30 September 2017

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30 September 2017

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Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 A resolution

30 September 2017

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RNA loop-loop interactions as dynamic functional motifs.

30 September 2017

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Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs

30 September 2017

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Specificity of RNA-RNA helix recognition

30 September 2017

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The non-Watson-Crick base pairs and their associated isostericity matrices

30 September 2017

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30 September 2017

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Ribosome structure and the mechanism of translation

30 September 2017

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Quantitative analysis of the isolated GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study

30 September 2017

1 reference

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Geometric nomenclature and classification of RNA base pairs

30 September 2017

1 reference

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Recognition of cognate transfer RNA by the 30S ribosomal subunit

30 September 2017

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RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

30 September 2017

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A universal mode of helix packing in RNA.

30 September 2017

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TectoRNA: modular assembly units for the construction of RNA nano-objects

30 September 2017

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Plasticity, evolvability, and modularity in RNA

30 September 2017

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Structure of the 30S ribosomal subunit

30 September 2017

1 reference

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Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site

30 September 2017

1 reference

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Structure-function relationships of two closely related group IC3 intron ribozymes from Azoarcus and Synechococcus pre-tRNA.

30 September 2017

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

30 September 2017

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A complex ligase ribozyme evolved in vitro from a group I ribozyme domain

30 September 2017

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In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.

30 September 2017

1 reference

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30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

In vitro selection of RNAs with increased tertiary structure stability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

A conserved motif in group IC3 introns is a new class of GNRA receptor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Solution structure of a GAAA tetraloop receptor RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

RNA tertiary structure mediation by adenosine platforms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Crystal structure of a group I ribozyme domain: principles of RNA packing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Frequent use of the same tertiary motif by self-folding RNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

G-ribo: a new structural motif in ribosomal RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Crystal structure of a group I intron splicing intermediate

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

On the occurrence of the T-loop RNA folding motif in large RNA molecules

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Multiple tertiary interactions involving domain II of group II self-splicing introns.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Activation of the catalytic core of a group I intron by a remote 3' splice junction

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Generation of a catalytic module on a self-folding RNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Characterization of tectoRNA assembly with cationic conjugated polymers

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

GU receptors of double helices mediate tRNA movement in the ribosome

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Apical loop-internal loop interactions: a new RNA-RNA recognition motif identified through in vitro selection against RNA hairpins of the hepatitis C virus mRNA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275092

A comparative study on two GNRA-tetraloop receptors: 11-nt and IC3 motifs

21 September 2018

1 reference

12 December 2020

In vitro genetic analysis of the Tetrahymena self-splicing intron

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

12 December 2020

Tecto-RNA: One-Dimensional Self-Assembly through Tertiary Interactions This work was carried out in Strasbourg with the support of grants to N.B.L. from the NIH (1R15 GM55898) and the NIH Fogarty Institute (1-F06-TW02251-01) and the support of the C

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKM1048

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

18158305

1 reference