(Q36519505)

English

Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations

scientific article published on April 2004

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Tyrosine phenol-lyase and tryptophan indole-lyase encapsulated in wet nanoporous silica gels: Selective stabilization of tertiary conformations (English)

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Stefano Bettati

object named as

Stefano Bettati

2

0 references

Robert S. Phillips

object named as

Robert S Phillips

5

0 references

Andrea Mozzarelli

object named as

Andrea Mozzarelli

6

0 references

author name string

Barbara Pioselli

1

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Tatyana V Demidkina

3

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Lyudmila N Zakomirdina

4

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

publication date

1 April 2004

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Protein Science

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

13

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

4

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

913-924

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Caging helps proteins fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: molecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Screening of inhibitors using enzymes entrapped in sol-gel-derived materials

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Structure and dynamics of proteins encapsulated in silica hydrogels by Trp phosphorescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Structure and mechanism of tryptophan indole-lyase and tyrosine phenol-lyase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Simulations of beta-hairpin folding confined to spherical pores using distributed computing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Dynamics of green fluorescent protein mutant2 in solution, on spin-coated glasses, and encapsulated in wet silica gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Modulation of the internal aldimine pK(a)'s of 1-aminocyclopropane-1-carboxylate synthase and aspartate aminotransferase by specific active site residues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

High and low oxygen affinity conformations of T state hemoglobin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Molecular confinement influences protein structure and enhances thermal protein stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Sol-gel trapping of functional intermediates of hemoglobin: geminate and bimolecular recombination studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Bioencapsulation within synthetic polymers (Part 1): sol-gel encapsulated biologicals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Ligand binding induces a large conformational change in O-acetylserine sulfhydrylase from Salmonella typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Crystal structure of tryptophanase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Loop closure and intersubunit communication in tryptophan synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

The crystal structure of Citrobacter freundii tyrosine phenol-lyase complexed with 3-(4'-hydroxyphenyl)propionic acid, together with site-directed mutagenesis and kinetic analysis, demonstrates that arginine 381 is required for substrate specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Three-dimensional structure of tyrosine phenol-lyase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Crystal structures of true enzymatic reaction intermediates: aspartate and glutamate ketimines in aspartate aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Fixation of the quaternary structures of human adult haemoglobin by encapsulation in transparent porous silica gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Tyrosine phenol lyase. I. Purification, crystallization, and properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Microspectrophotometric studies on single crystals of the tryptophan synthase alpha 2 beta 2 complex demonstrate formation of enzyme-substrate intermediates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Domain closure in mitochondrial aspartate aminotransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

The interaction of Escherichia coli tryptophanase with various amino and their analogs. Active site mapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

30 September 2017

Direct observation of two distinct affinity conformations in the T state human deoxyhemoglobin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Kinetic studies of tryptophan synthetase. Interaction of L-serine, indole, and tryptophan with the native enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Microcrystals of tryptophan synthase alpha 2 beta 2 complex from Salmonella typhimurium are catalytically active.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Mechanistic deductions from kinetic isotope effects and pH studies of pyridoxal phosphate dependent carbon-carbon lyases: Erwinia herbicola and Citrobacter freundii tyrosine phenol-lyase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Reactions of O-acyl-L-serines with tryptophanase, tyrosine phenol-lyase, and tryptophan synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Reaction of indole and analogues with amino acid complexes of Escherichia coli tryptophan indole-lyase: detection of a new reaction intermediate by rapid-scanning stopped-flow spectrophotometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Equilibria and absorption spectra of tryptophanase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

The origin of reaction specificity in serine hydroxymethyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Direct spectrophotometric assay of tryptophanase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

28 June 2018

Trapping specific quaternary states of the allosteric enzyme aspartate transcarbamoylase in silica matrix sol-gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Tryptophan indole-lyase from Proteus vulgaris: kinetic and spectral properties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Threonine-124 and phenylalanine-448 in Citrobacter freundii tyrosine phenol-lyase are necessary for activity with L-tyrosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Crystals of tryptophan indole-lyase and tyrosine phenol-lyase form stable quinonoid complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Use of silicate sol-gels to trap the R and T quaternary conformational states of pig kidney fructose-1,6-bisphosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Catalytic competence of O-acetylserine sulfhydrylase in the crystal probed by polarized absorption microspectrophotometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Dynamics of acrylodan-labeled bovine and human serum albumin entrapped in a sol-gel-derived biogel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 September 2018

Overexpression, immobilization and biotechnological application of Pseudomonas lipases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280055

21 October 2018

Pyridoxal 5'-phoshate schiff base in Citrobacter freundii tyrosinephenol-lyase. Ionic and tautomeric equilibria

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stabilization of Proteins in Confined Spaces†

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxygen equilibrium properties of myoglobin locked in the liganded and unliganded conformations

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions of tryptophan synthase, tryptophanase, and pyridoxal phosphate with oxindolyl-L-alanine and 2,3-dihydro-L-tryptophan: support for an indolenine intermediate in tryptophan metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

T State Hemoglobin Binds Oxygen Noncooperatively with Allosteric Effects of Protons, Inositol Hexaphosphate, and Chloride

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the pH- and ligand-induced spectral transitions of tryptophanase: activation of the coenzyme at the early steps of the catalytic cycle

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetics and thermodynamics of free flavins and the flavin-based redox active site within glucose oxidase dissolved in solution or sequestered within a sol-gel-derived glass

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UV resonance raman spectra of ligand binding intermediates of sol-gel encapsulated hemoglobin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Encapsulation of Proteins in Transparent Porous Silicate Glasses Prepared by the Sol-Gel Method

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of phenol and analogues to alanine complexes of tyrosine phenol-lyase from Citrobacter freundii: implications for the mechanisms of alpha,beta-elimination and alanine racemization

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-directed mutagenesis of His343-->Ala in Citrobacter freundii tyrosine phenol-lyase. Effects on the kinetic mechanism and rate-determining step

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-directed mutagenesis of tyrosine-71 to phenylalanine in Citrobacter freundii tyrosine phenol-lyase: evidence for dual roles of tyrosine-71 as a general acid catalyst in the reaction mechanism and in cofactor binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044726

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.03492904

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

ResearchGate publication ID

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