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Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes.
scientific article published on 25 November 2015
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Europe PubMed Central
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4733179
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26607978%20AND%20SRC:MED&resulttype=core&format=json
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1 March 2020
title
Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes
(English)
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4733179
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1 March 2020
main subject
Listeria monocytogenes
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whole genome sequencing
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Jason C. Kwong
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1
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4733179
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1 March 2020
Dieter Bulach
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6
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1 March 2020
Timothy Stinear
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7
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1 March 2020
Torsten Seemann
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1 March 2020
Benjamin P. Howden
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9
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1 March 2020
Karolina Mercoulia
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Karolina Mercoulia
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1 March 2020
Marion Easton
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Marion Easton
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1 March 2020
author name string
Takehiro Tomita
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3
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4733179
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1 March 2020
Hua Y Li
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5
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4733179
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1 March 2020
language of work or name
English
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publication date
25 November 2015
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4733179
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1 March 2020
published in
Journal of Clinical Microbiology
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PMC publication ID
4733179
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26607978%20AND%20SRC:MED&resulttype=core&format=json
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1 March 2020
volume
54
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4733179
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1 March 2020
issue
2
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Europe PubMed Central
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4733179
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1 March 2020
page(s)
333-342
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Europe PubMed Central
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4733179
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1 March 2020
cites work
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Salmonella serotype determination utilizing high-throughput genome sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Whole genome sequencing in clinical and public health microbiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Genetic distance in the whole-genome perspective on Listeria monocytogenes strains F2-382 and NIHS-28 that show similar subtyping results
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Prokka: rapid prokaryotic genome annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Automated reconstruction of whole-genome phylogenies from short-sequence reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Genome sequencing of Listeria monocytogenes "Quargel" listeriosis outbreak strains reveals two different strains with distinct in vitro virulence potential
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Genomic characterization of novel Listeria monocytogenes serotype 4b variant strains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Identification of an optimized panel of variable number tandem-repeat (VNTR) loci for Listeria monocytogenes typing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
An integrated pipeline for de novo assembly of microbial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Multilocus sequence typing of total-genome-sequenced bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Pulsed field gel electrophoresis: A review of application and interpretation in the molecular epidemiology of infectious disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
FastTree 2--approximately maximum-likelihood trees for large alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Listeria monocytogenes: a multifaceted model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Application of phylogenetic networks in evolutionary studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Differentiation of the major Listeria monocytogenes serovars by multiplex PCR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
DNA polymorphism in strains of Listeria monocytogenes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
30 September 2017
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
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Multistate outbreak of listeriosis associated with cantaloupe
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
28 June 2018
Informed and automated k-mer size selection for genome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4733179
retrieved
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1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26607978
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Real-time digital pathogen surveillance - the time is now.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26607978
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/JCM.02344-15
1 reference
stated in
Europe PubMed Central
PMC publication ID
4733179
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26607978%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
PMC publication ID
4733179
1 reference
stated in
Europe PubMed Central
PMC publication ID
4733179
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26607978%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
PubMed publication ID
26607978
1 reference
stated in
Europe PubMed Central
PMC publication ID
4733179
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26607978%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
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