(Q36535036)

14 August 2017

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title

Chemical synthesis of oligonucleotides containing damaged bases for biological studies (English)

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14 August 2017

Shigenori Iwai

1

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14 August 2017

publication date

1 January 2006

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Nucleosides, Nucleotides & Nucleic Acids

14 August 2017

published in

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14 August 2017

volume

25

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14 August 2017

issue

4-6

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14 August 2017

page(s)

561-582

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Functions of human DNA polymerases eta, kappa and iota suggested by their properties, including fidelity with undamaged DNA templates.

14 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

21 January 2018

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A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

21 January 2018

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https://api.crossref.org/works/10.1080%2F15257770600685826

Role of oxygen radicals in DNA damage and cancer incidence.

21 January 2018

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https://api.crossref.org/works/10.1080%2F15257770600685826

Ultraviolet radiation-mediated damage to cellular DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Carcinogenic polycyclic aromatic hydrocarbon-DNA adducts and mechanism of action

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

The interacting pathways for prevention and repair of oxidative DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Abasic oligodeoxyribonucleoside phosphorothioates: synthesis and evaluation as anti-HIV-1 agents

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Lesion (in)tolerance reveals insights into DNA replication fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Half-life and DNA strand scission products of 2-deoxyribonolactone oxidative DNA damage lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and characterization of oligodeoxynucleotides containing formamidopyrimidine lesions and nonhydrolyzable analogues

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of oligonucleotides containing Fapy.dG (N6-(2-deoxy-alpha,beta-D-erythro-pentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of oligonucleotides containing Fapy.dG (N(6)-(2-deoxy-alpha,beta-D-erythropentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine) using a 5'-dimethoxytrityl dinucleotide phosphoramidite

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and thermodynamic studies of oligonucleotides containing the two isomers of thymine glycol

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Preferential formation of (5S,6R)-thymine glycol for oligodeoxyribonucleotide synthesis and analysis of drug binding to thymine glycol-containing DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Translesion synthesis by human DNA polymerase eta across thymine glycol lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

The effects of 5R-5,6-dihydro-5-hydroxythymidine on duplex DNA stability and structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of DNA fragments containing 5,6-dihydrothymine, a major product of thymine gamma radiolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Solid phase synthesis and restriction endonuclease cleavage of oligodeoxynucleotides containing 5-(hydroxymethyl)-cytosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and properties of oligonucleotides containing 5-formyl-2'-deoxycytidine: in vitro DNA polymerase reactions on DNA templates containing 5-formyl-2'-deoxycytidine

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and cleavage of oligodeoxynucleotides containing a 5-hydroxyuracil residue at a defined site

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Incorporation by chemical synthesis and characterization of deoxyribosylformylamine into DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Chemical synthesis and biochemical properties of oligonucleotides that contain the (5'S,5S,6S)-5',6-cyclo-5-hydroxy-5,6-dihydro-2'-deoxyuridine DNA lesion

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of a trans-syn thymine dimer building block. Solid phase synthesis of CGTAT[t,s]TATGC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and characterization of a substrate for T4 endonuclease V containing a phosphorodithioate linkage at the thymine dimer site

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Chemical synthesis and translesion replication of a cis-syn cyclobutane thymine-uracil dimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Replication of a cis-syn thymine dimer at atomic resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Xeroderma pigmentosum variant (XP-V) correcting protein from HeLa cells has a thymine dimer bypass DNA polymerase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Preferential cis-syn thymine dimer bypass by DNA polymerase eta occurs with biased fidelity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Misinsertion and bypass of thymine-thymine dimers by human DNA polymerase iota

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

A role for DNA polymerase beta in mutagenic UV lesion bypass

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

High-efficiency bypass of DNA damage by human DNA polymerase Q

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Benzimidazolium triflate-activated synthesis of (6-4) photoproduct-containing oligonucleotides and its application

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Binding and catalytic properties of Xenopus (6-4) photolyase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Role of two histidines in the (6-4) photolyase reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Characterization of DNA recognition by the human UV-damaged DNA-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

A simple method for the solid phase synthesis of oligodeoxynucleotides containing O4-alkylthymine

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

1,N6-etheno deoxy and ribo adenosine and 3,N4-etheno deoxy and ribo cytidine phosphoramidites. Strongly fluorescent structures for selective introduction in defined sequence DNA and RNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Regioselective synthesis of 1,N(2)-etheno-2'-deoxyguanosine and its generation in oligomeric DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of oligonucleotides containing the alkali-labile pyrimidopurinone adduct, M(1)G

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of 8-(hydroxymethyl)-3,N(4)-etheno-2'-deoxycytidine, a potential carcinogenic glycidaldehyde adduct, and its site-specific incorporation into DNA oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Large scale synthesis of p-benzoquinone-2'-deoxycytidine and p-benzoquinone-2'-deoxyadenosine adducts and their site-specific incorporation into DNA oligonucleotides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

DNA bending and a flip-out mechanism for base excision by the helix–hairpin–helix DNA glycosylase, Escherichia coli AlkA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

O(6)-allyl protected deoxyguanosine adducts of polycyclic aromatic hydrocarbons as building blocks for the synthesis of oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Efficient synthesis of the benzo[a]pyrene metabolic adducts of 2'-deoxyguanosine and 2'-deoxyadenosine and their direct incorporation into DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Nature and nurture - lessons from chemical carcinogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Preparation of oligodeoxynucleotides containing a diastereoisomer of alpha-(N(2)-2'-deoxyguanosinyl)tamoxifen by phosphoramidite chemical synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified 'ultra-mild' DNA synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Site-specific synthesis and properties of oligonucleotides containing C8-deoxyguanosine adducts of the dietary mutagen IQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Site-Specific Generation of Deoxyribonolactone Lesions in DNA Oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

A new method for the postsynthetic generation of abasic sites in oligomeric DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and characterization of oligonucleotides containing the c4'-oxidized abasic site produced by bleomycin and other DNA damaging agents

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

A Highly Efficient Synthesis of Oligodeoxyribonucleotides Containing the 2‘-Deoxyribonolactone Lesion

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of 2'-deoxy-7,8-dihydro-8-oxoguanosine and 2'-deoxy-7,8-dihydro-8-oxoadenosine and their incorporation into oligomeric DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and biochemical properties of cyanuric acid nucleoside-containing DNA oligomers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of Thymine Glycol Containing Oligonucleotides from a Building Block with the Oxidized Base

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis of oligonucleotides containing two putatively mutagenic DNA lesions: 5-hydroxy-2'-deoxyuridine and 5-hydroxy-2'-deoxycytidine

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Repair and coding properties of 5-hydroxy-5-methylhydantoin nucleosides inserted into DNA oligomers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

Synthesis and properties of H-ras DNA sequences containing O6-substituted 2'-deoxyguanosine residues at the first, second, or both positions of codon 12

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F15257770600685826

10.1080/15257770600685826

21 January 2018

Identifiers

DOI

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14 August 2017

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