(Q36535134)

14 August 2017

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis (English)

1 reference

14 August 2017

0 references

1 reference

Francois Balloux

29

0 references

Jun Wang

object named as

Jun Wang

32

0 references

Thibaut Jombart

6

object named as

Thibaut Jombart

1 reference

14 August 2017

30

Mark Achtman

1 reference

14 August 2017

28

Daniel Falush

1 reference

14 August 2017

33

Ruifu Yang

1 reference

14 August 2017

Yujun Cui

1

1 reference

14 August 2017

Chang Yu

2

1 reference

14 August 2017

Yanfeng Yan

3

1 reference

14 August 2017

Dongfang Li

4

1 reference

14 August 2017

Yanjun Li

5

1 reference

14 August 2017

Lucy A Weinert

7

1 reference

14 August 2017

Zuyun Wang

8

1 reference

14 August 2017

Zhaobiao Guo

9

1 reference

14 August 2017

Lizhi Xu

10

1 reference

14 August 2017

Yujiang Zhang

11

1 reference

14 August 2017

Hancheng Zheng

12

1 reference

14 August 2017

Nan Qin

13

1 reference

14 August 2017

Xiao Xiao

14

1 reference

14 August 2017

Mingshou Wu

15

1 reference

14 August 2017

Xiaoyi Wang

16

1 reference

14 August 2017

Dongsheng Zhou

17

1 reference

14 August 2017

Zhizhen Qi

18

1 reference

14 August 2017

Zongmin Du

19

1 reference

14 August 2017

Honglong Wu

20

1 reference

14 August 2017

Xianwei Yang

21

1 reference

14 August 2017

Hongzhi Cao

22

1 reference

14 August 2017

Hu Wang

23

1 reference

14 August 2017

Jing Wang

24

1 reference

14 August 2017

Shusen Yao

25

1 reference

14 August 2017

Alexander Rakin

26

1 reference

14 August 2017

Yingrui Li

27

1 reference

14 August 2017

Yajun Song

31

1 reference

14 August 2017

language of work or name

English

0 references

publication date

27 December 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

110

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14 August 2017

2

1 reference

14 August 2017

577-582

1 reference

A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

A draft genome of Yersinia pestis from victims of the Black Death

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Nonlinear effect of climate on plague during the third pandemic in China

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

High throughput, multiplexed pathogen detection authenticates plague waves in medieval Venice, Italy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Prevalence of epistasis in the evolution of influenza A surface proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Distinct clones of Yersinia pestis caused the black death

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Bayesian random local clocks, or one rate to rule them all

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Evolution of MRSA during hospital transmission and intercontinental spread

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

De novo assembly of human genomes with massively parallel short read sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genome evolution and adaptation in a long-term experiment with Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Different region analysis for genotyping Yersinia pestis isolates from China

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Plague: past, present, and future

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

BEAST: Bayesian evolutionary analysis by sampling trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Yersinia pestis Orientalis in remains of ancient plague patients

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Evolutionary history of Salmonella typhi

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Plague dynamics are driven by climate variation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Relaxed phylogenetics and dating with confidence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Yersinia pestis as a telluric, human ectoparasite-borne organism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

The evolution of flea-borne transmission in Yersinia pestis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Microevolution and history of the plague bacillus, Yersinia pestis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genotyping, Orientalis-like Yersinia pestis, and plague pandemics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Natural history of plague: perspectives from more than a century of research

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Detection of Yersinia pestis DNA in two early medieval skeletal finds from Aschheim (Upper Bavaria, 6th century A.D.).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Complete Genome Sequence of Yersinia pestis Strain 91001, an Isolate Avirulent to Humans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Attenuated enzootic (pestoides) isolates of Yersinia pestis express active aspartase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Yersinia pestis genotyping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Poor vector competence of fleas and the evolution of hypervirulence in Yersinia pestis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Detecting the node-density artifact in phylogeny reconstruction

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

Rate of Fixation of Nucleotide Substitutions in Evolution

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545753

21 September 2018

Identifiers

DOI

10.1073/PNAS.1205750110

1 reference

14 August 2017

0 references

1 reference

14 August 2017

1 reference