(Q36596534)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

0 references

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

author name string

Jemma L Webber

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Jie Zhang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Lauren Cote

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Pavithra Vivekanand

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Xiaochun Ni

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Jie Zhou

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Richard W Carthew

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Kevin P White

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Ilaria Rebay

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

language of work or name

English

0 references

publication date

19 November 2012

1 reference

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18 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

volume

193

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

page(s)

633-649

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

18 February 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3567750/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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9 September 2017

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Shadow enhancers foster robustness of Drosophila gastrulation

9 September 2017

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On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence

9 September 2017

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Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives

9 September 2017

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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

9 September 2017

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Phenotypic robustness conferred by apparently redundant transcriptional enhancers

9 September 2017

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DNA binding by the ETS protein TEL (ETV6) is regulated by autoinhibition and self-association

9 September 2017

1 reference

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Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

9 September 2017

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BEDTools: a flexible suite of utilities for comparing genomic features

9 September 2017

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Integration of data obtained by different experimental methods to determine the motifs in DNA sequences recognized by transcription-regulating factors

9 September 2017

1 reference

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Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila

9 September 2017

1 reference

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Combinatorial binding predicts spatio-temporal cis-regulatory activity

9 September 2017

1 reference

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

9 September 2017

1 reference

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Motif discovery and motif finding from genome-mapped DNase footprint data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

9 September 2017

1 reference

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

9 September 2017

1 reference

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

9 September 2017

1 reference

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

9 September 2017

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The UCSC Genome Browser Database: update 2009

9 September 2017

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Model-based analysis of ChIP-Seq (MACS)

9 September 2017

1 reference

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Shadow enhancers as a source of evolutionary novelty

9 September 2017

1 reference

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

9 September 2017

1 reference

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Integration of biological networks and gene expression data using Cytoscape

9 September 2017

1 reference

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Global analysis of patterns of gene expression during Drosophila embryogenesis

9 September 2017

1 reference

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

9 September 2017

1 reference

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Chromatin immunoprecipitation and microarray-based analysis of protein location

9 September 2017

1 reference

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Model-based analysis of tiling-arrays for ChIP-chip.

9 September 2017

1 reference

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Chromosomal distribution of PcG proteins during Drosophila development

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye

9 September 2017

1 reference

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Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

9 September 2017

The many faces of SAM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Systematic determination of patterns of gene expression during Drosophila embryogenesis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Native interface of the SAM domain polymer of TEL.

9 September 2017

1 reference

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The SAM domain of polyhomeotic forms a helical polymer

9 September 2017

1 reference

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Transcriptional repression: the long and the short of it.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Detection of cis-element clusters in higher eukaryotic DNA.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Polymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Sequence and functional properties of Ets genes in the model organism Drosophila

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Methods and statistics for combining motif match scores

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Genetic characterization and cloning of mothers against dpp, a gene required for decapentaplegic function in Drosophila melanogaster

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Mutations affecting segment number and polarity in Drosophila

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Sterile alpha motif domain-mediated self-association plays an essential role in modulating the activity of the Drosophila ETS family transcriptional repressor Yan.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Derepression by depolymerization; structural insights into the regulation of Yan by Mae.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Developmental regulation of chromatin conformation by Hox proteins in Drosophila

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The growth-suppressive function of the polycomb group protein polyhomeotic is mediated by polymerization of its sterile alpha motif (SAM) domain

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Antagonistic regulation of Yan nuclear export by Mae and Crm1 may increase the stringency of the Ras response

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Yan regulates Lozenge during Drosophila eye development

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Notch activation of yan expression is antagonized by RTK/pointed signaling in the Drosophila eye.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Overlapping activators and repressors delimit transcriptional response to receptor tyrosine kinase signals in the Drosophila eye.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The yan gene is highly conserved in Drosophila and its expression suggests a complex role throughout development

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Control of midline glia development in the embryonic Drosophila CNS.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Drosophila Jun kinase regulates expression of decapentaplegic via the ETS-domain protein Aop and the AP-1 transcription factor DJun during dorsal closure

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

EGF receptor signaling induces pointed P1 transcription and inactivates Yan protein in the Drosophila embryonic ventral ectoderm.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Genetic dissection of pointed, a Drosophila gene encoding two ETS-related proteins.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The Drosophila gene pointed encodes two ETS-like proteins which are involved in the development of the midline glial cells

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The activities of two Ets-related transcription factors required for Drosophila eye development are modulated by the Ras/MAPK pathway

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Genome wide analysis of transcript levels after perturbation of the EGFR pathway in the Drosophila ovary.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

MAE, a dual regulator of the EGFR signaling pathway, is a target of the Ets transcription factors PNT and YAN.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

CRM1-mediated nuclear export and regulated activity of the Receptor Tyrosine Kinase antagonist YAN require specific interactions with MAE.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Combinatorial signaling in the specification of unique cell fates

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Ras pathway specificity is determined by the integration of multiple signal-activated and tissue-restricted transcription factors.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The Drosophila Medea gene is required downstream of dpp and encodes a functional homolog of human Smad4.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Spitz and Wingless, emanating from distinct borders, cooperate to establish cell fate across the Engrailed domain in the Drosophila epidermis.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

The role of yan in mediating the choice between cell division and differentiation

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Argos transcription is induced by the Drosophila EGF receptor pathway to form an inhibitory feedback loop.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

Yan functions as a general inhibitor of differentiation and is negatively regulated by activation of the Ras1/MAPK pathway.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3567750

10.1534/GENETICS.112.146647

20 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23172856%20AND%20SRC:MED&resulttype=core&format=json