(Q36628891)

English

Structure-based in silico identification of ubiquitin-binding domains provides insights into the ALIX-V:ubiquitin complex and retrovirus budding

scientific article published on 29 January 2013

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scholarly article

1 reference

Europe PubMed Central

15 August 2017

Structure-based in silico identification of ubiquitin-binding domains provides insights into the ALIX-V:ubiquitin complex and retrovirus budding (English)

1 reference

Europe PubMed Central

15 August 2017

1 reference

based on heuristic

inferred from title

11

object named as

Haim J Wolfson

1 reference

Europe PubMed Central

15 August 2017

10

object named as

Eric O Freed

1 reference

Europe PubMed Central

15 August 2017

author name string

Tal Keren-Kaplan

1

1 reference

Europe PubMed Central

15 August 2017

Ilan Attali

2

1 reference

Europe PubMed Central

15 August 2017

Michael Estrin

3

1 reference

Europe PubMed Central

15 August 2017

Lillian S Kuo

4

1 reference

Europe PubMed Central

15 August 2017

Efrat Farkash

5

1 reference

Europe PubMed Central

15 August 2017

Moran Jerabek-Willemsen

6

1 reference

Europe PubMed Central

15 August 2017

Noa Blutraich

7

1 reference

Europe PubMed Central

15 August 2017

Shay Artzi

8

1 reference

Europe PubMed Central

15 August 2017

Aviyah Peri

9

1 reference

Europe PubMed Central

15 August 2017

Gali Prag

12

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Europe PubMed Central

15 August 2017

language of work or name

0 references

publication date

29 January 2013

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Europe PubMed Central

15 August 2017

The EMBO Journal

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Europe PubMed Central

15 August 2017

32

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Europe PubMed Central

15 August 2017

4

1 reference

Europe PubMed Central

15 August 2017

538-551

1 reference

Europe PubMed Central

15 August 2017

ALIX is a Lys63-specific polyubiquitin binding protein that functions in retrovirus budding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitin-binding proteins: decoders of ubiquitin-mediated cellular functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Synthetic biology approach to reconstituting the ubiquitylation cascade in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Systematic and quantitative assessment of the ubiquitin-modified proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Proline-rich regions and motifs in trafficking: from ESCRT interaction to viral exploitation

1 reference

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30 September 2017

A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis

1 reference

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30 September 2017

WD40 Repeat Propellers Define a Ubiquitin-Binding Domain that Regulates Turnover of F Box Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Protein-binding assays in biological liquids using microscale thermophoresis

1 reference

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30 September 2017

FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking

1 reference

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30 September 2017

VHS domains of ESCRT-0 cooperate in high-avidity binding to polyubiquitinated cargo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

FiberDock: Flexible induced-fit backbone refinement in molecular docking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Monoubiquitinylation regulates endosomal localization of Lst2, a negative regulator of EGF receptor signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Hybrid Structural Model of the Complete Human ESCRT-0 Complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Regulation of the RSP5 ubiquitin ligase by an intrinsic ubiquitin-binding site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Functional replacement of a retroviral late domain by ubiquitin fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Differential requirements for Alix and ESCRT-III in cytokinesis and HIV-1 release

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

ALIX-CHMP4 interactions in the human ESCRT pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Structural and functional studies of ALIX interactions with YPX(n)L late domains of HIV-1 and EIAV

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Beyond Tsg101: the role of Alix in 'ESCRTing' HIV-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

The Vps27/Hse1 Complex Is a GAT Domain-Based Scaffold for Ubiquitin-Dependent Sorting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Structural and biochemical studies of ALIX/AIP1 and its role in retrovirus budding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Structural basis for viral late-domain binding to Alix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitin-binding domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

EGF-ERBB signalling: towards the systems level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Role of ubiquitylation in cellular membrane transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitin-binding domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

SiteEngines: recognition and comparison of binding sites and protein-protein interfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, gamma-ear-containing, ADP-ribosylation-factor-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Recognition of functional sites in protein structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitin interactions of NZF zinc fingers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Late domain-dependent inhibition of equine infectious anemia virus budding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Mechanism of ubiquitin recognition by the CUE domain of Vps9p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

A ubiquitin-binding motif required for intramolecular monoubiquitylation, the CUE domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Yeast Npi3/Bro1 is involved in ubiquitin-dependent control of permease trafficking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Functional replacement and positional dependence of homologous and heterologous L domains in equine infectious anemia virus replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Overcoming expression and purification problems of RhoGDI using a family of "parallel" expression vectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Ubiquitination of a yeast plasma membrane receptor signals its ligand-stimulated endocytosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Protein structure comparison by alignment of distance matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

30 September 2017

NH4+-induced down-regulation of the Saccharomyces cerevisiae Gap1p permease involves its ubiquitination with lysine-63-linked chains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

28 June 2018

Ubiquitin lys63 is involved in ubiquitination of a yeast plasma membrane protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

28 June 2018

FireDock: fast interaction refinement in molecular docking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

20 September 2018

E3-independent monoubiquitination of ubiquitin-binding proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

20 September 2018

How HIV-1 hijacks ALIX.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

20 September 2018

An Alix fragment potently inhibits HIV-1 budding: characterization of binding to retroviral YPXL late domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579145

20 September 2018

An integrated suite of fast docking algorithms

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2013.4

21 January 2018

Structural analysis of GroE chaperonin complexes using chemical cross-linking

1 reference

https://pubmed.ncbi.nlm.nih.gov/23361315

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The yeast Npi1/Rsp5 ubiquitin ligase lacking its N-terminal C2 domain is competent for ubiquitination but not for subsequent endocytosis of the gap1 permease

1 reference

https://pubmed.ncbi.nlm.nih.gov/23361315

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/EMBOJ.2013.4

1 reference

Europe PubMed Central

15 August 2017

1 reference

Europe PubMed Central

15 August 2017

1 reference

Europe PubMed Central

15 August 2017

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