(Q36672431)

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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

scientific article published on January 2007

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scholarly article

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1 January 2020

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome (English)

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1 January 2020

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1 January 2020

Agnes Hotz-Wagenblatt

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Agnes Hotz-Wagenblatt

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1 January 2020

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Britta Mersch

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Gil Ast

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1 January 2020

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Nurit Gal-Mark

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1 January 2020

Galit Lev-Maor

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publication date

1 January 2007

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1 January 2020

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1 January 2020

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1 January 2020

R127

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1 January 2020

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-6-r127

0 references

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

1 reference

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30 September 2017

The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage

1 reference

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30 September 2017

RNA-editing-mediated exon evolution

1 reference

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30 September 2017

Evolutionary history of 7SL RNA-derived SINEs in Supraprimates

1 reference

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30 September 2017

Modern origin of numerous alternatively spliced human introns from tandem arrays

1 reference

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30 September 2017

Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

1 reference

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30 September 2017

Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site.

1 reference

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30 September 2017

Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Alu elements as regulators of gene expression

1 reference

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30 September 2017

Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

1 reference

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30 September 2017

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

1 reference

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30 September 2017

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

1 reference

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30 September 2017

Do transposable elements really contribute to proteomes?

1 reference

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30 September 2017

Regulation of gene expression by alternative untranslated regions

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30 September 2017

Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression

1 reference

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30 September 2017

The PROSITE database.

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30 September 2017

Database resources of the National Center for Biotechnology Information

1 reference

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30 September 2017

Transcription factor YY1: structure, function, and therapeutic implications in cancer biology.

1 reference

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30 September 2017

The importance of being divisible by three in alternative splicing

1 reference

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30 September 2017

Origin and evolution of new exons in rodents

1 reference

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30 September 2017

From the margins of the genome: mobile elements shape primate evolution

1 reference

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30 September 2017

LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?

1 reference

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30 September 2017

A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease

1 reference

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30 September 2017

Alu-SINE exonization: en route to protein-coding function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

The origin of recent introns: transposons?

1 reference

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30 September 2017

How did alternative splicing evolve?

1 reference

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30 September 2017

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

1 reference

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30 September 2017

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation

1 reference

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30 September 2017

An unappreciated role for RNA surveillance

1 reference

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30 September 2017

How prevalent is functional alternative splicing in the human genome?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

YY1AP, a novel co-activator of YY1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Mobile elements and mammalian genome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences

1 reference

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30 September 2017

Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Initial sequencing and comparative analysis of the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Alu-containing exons are alternatively spliced

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Alternative splicing of the adenylyl cyclase stimulatory G-protein G alpha(s) is regulated by SF2/ASF and heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) and involves the use of an unusual TG 3'-splice Site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Repbase update: a database and an electronic journal of repetitive elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

A novel Alu-like element rearranged in the dystrophin gene causes a splicing mutation in a family with X-linked dilated cardiomyopathy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Functional analysis of the polypyrimidine tract in pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

30 September 2017

Identification of splicing silencers and enhancers in sense Alus: a role for pseudoacceptors in splice site repression

1 reference

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28 June 2018

uAUG and uORFs in human and rodent 5'untranslated mRNAs

1 reference

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28 June 2018

Phylogeny of phagotrophic euglenids (Euglenozoa) as inferred from hsp90 gene sequences.

1 reference

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20 September 2018

Characterization of intron loss events in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

20 September 2018

Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

20 September 2018

Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

20 September 2018

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

20 September 2018

Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer.

1 reference

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20 September 2018

KUB3 amplification and overexpression in human gliomas.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2394776

20 September 2018

Identifiers

10.1186/GB-2007-8-6-R127

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1 January 2020

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1 January 2020

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1 January 2020

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