(Q36702406)

English

Bioinformatics analysis reveals biophysical and evolutionary insights into the 3-nitrotyrosine post-translational modification in the human proteome

scientific article published on 6 February 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Bioinformatics analysis reveals biophysical and evolutionary insights into the 3-nitrotyrosine post-translational modification in the human proteome (English)

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

1 reference

based on heuristic

inferred from title

author name string

John Y Ng

1

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Lies Boelen

2

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Jason W H Wong

3

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

publication date

6 February 2013

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

2

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

120148

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Protein tyrosine nitration of mitochondrial carbamoyl phosphate synthetase 1 and its functional consequences

1 reference

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30 September 2017

A methodology for simultaneous fluorogenic derivatization and boronate affinity enrichment of 3-nitrotyrosine-containing peptides

1 reference

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Proteomic detection of nitroproteins as potential biomarkers for cardiovascular disease

1 reference

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Lung cancer biomarkers in exhaled breath

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Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase

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GPS-YNO2: computational prediction of tyrosine nitration sites in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

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The nitric oxide prodrug JS-K is effective against non-small-cell lung cancer cells in vitro and in vivo: involvement of reactive oxygen species

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Roles of 3-nitrotyrosine- and 4-hydroxynonenal-modified brain proteins in the progression and pathogenesis of Alzheimer's disease

1 reference

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A comparative study of conservation and variation scores

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30 September 2017

Analytical methods for 3-nitrotyrosine quantification in biological samples: the unique role of tandem mass spectrometry

1 reference

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In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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Peroxynitrite induces tyrosine residue modifications in synaptophysin C-terminal domain, affecting its interaction with src

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Oxidative stress induced lung cancer and COPD: opportunities for epigenetic therapy

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30 September 2017

Protein tyrosine nitration: selectivity, physicochemical and biological consequences, denitration, and proteomics methods for the identification of tyrosine-nitrated proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

TAM receptor tyrosine kinases: biologic functions, signaling, and potential therapeutic targeting in human cancer

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Protein tyrosine phosphorylation and protein tyrosine nitration in redox signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Pathways for intracellular generation of oxidants and tyrosine nitration by a macrophage cell line

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

A curated compendium of phosphorylation motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Crystal structure of nitrated human manganese superoxide dismutase: mechanism of inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Nitrotyrosine and chlorotyrosine: clinical significance and biological functions in the vascular system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Why highly expressed proteins evolve slowly

1 reference

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30 September 2017

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Analysis of accessible surface of residues in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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A helix propensity scale based on experimental studies of peptides and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Peroxynitrite disables the tyrosine phosphorylation regulatory mechanism: Lymphocyte-specific tyrosine kinase fails to phosphorylate nitrated cdc2(6-20)NH2 peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

The reaction of no with superoxide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

30 September 2017

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

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28 June 2018

Peroxynitrite causes phosphorylation of vasodilator-stimulated phosphoprotein through a PKC dependent mechanism

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5 September 2018

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1 reference

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5 September 2018

Mass spectrometric identification of in vivo nitrotyrosine sites in the human pituitary tumor proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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Nitrative stress in refractory asthma

1 reference

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5 September 2018

A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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Effects of peroxynitrite-induced protein modifications on tyrosine phosphorylation and degradation

1 reference

https://api.crossref.org/works/10.1098%2FRSOB.120148

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Enrichment and Detection of Tyrosine-Nitrated Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3603447

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Immunoprecipitation of nitrotyrosine-containing proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

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Peroxynitrite inhibits T lymphocyte activation and proliferation by promoting impairment of tyrosine phosphorylation and peroxynitrite-driven apoptotic death

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

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based on heuristic

inferred from PubMed ID database lookup

Nitrative inactivation of thioredoxin-1 and its role in postischemic myocardial apoptosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the molecular basis of human manganese superoxide dismutase inactivation mediated by tyrosine 34 nitration

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Measurement of 3-nitro-tyrosine in human plasma and urine by gas chromatography-tandem mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Factors determining the selectivity of protein tyrosine nitration

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

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Tetranitromethane. A Reagent for the Nitration of Tyrosyl Residues in Proteins*

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

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based on heuristic

inferred from PubMed ID database lookup

Nitration of tyrosine by hydrogen peroxide and nitrite

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

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based on heuristic

inferred from PubMed ID database lookup

Peroxynitrite-induced tyrosine nitration and phosphorylation in human platelets

1 reference

https://pubmed.ncbi.nlm.nih.gov/23389939

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1098/RSOB.120148

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

ResearchGate publication ID

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