(Q36746960)

English

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis

scientific article published on 31 March 2016

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

0 references

Mycobacterium avium avium

1 reference

based on heuristic

inferred from title

Hooman Derakhshani

object named as

Hooman Derakhshani

1

0 references

object named as

Jeroen De Buck

2

0 references

Ehsan Khafipour

object named as

Ehsan Khafipour

6

0 references

Herman W. Barkema

object named as

Herman W Barkema

4

0 references

Rienske A R Mortier

3

object named as

Rienske Mortier

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

author name string

Denis O Krause

5

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

publication date

31 March 2016

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Frontiers in Microbiology

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

7

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

426

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Metabolomic profiling in cattle experimentally infected with Mycobacterium avium subsp. paratuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

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Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

1 reference

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29 September 2017

Evaluation of age-dependent susceptibility in calves infected with two doses of Mycobacterium avium subspecies paratuberculosis using pathology and tissue culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

1 reference

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Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?

1 reference

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

1 reference

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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

1 reference

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29 September 2017

Interactions between the microbiota and the immune system

1 reference

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29 September 2017

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

1 reference

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29 September 2017

PANDAseq: paired-end assembler for illumina sequences

1 reference

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Alterations in the gut microbiome of children with severe ulcerative colitis

1 reference

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29 September 2017

Metagenomic biomarker discovery and explanation

1 reference

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29 September 2017

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Immunological biomarkers of tuberculosis

1 reference

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29 September 2017

Current perspectives on Mycobacterium avium subsp. paratuberculosis, Johne's disease, and Crohn's disease: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

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High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

1 reference

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Induction of colonic regulatory T cells by indigenous Clostridium species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

High prevalence of viable Mycobacterium avium subspecies paratuberculosis in Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Search and clustering orders of magnitude faster than BLAST

1 reference

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gp130 at the nexus of inflammation, autoimmunity, and cancer

1 reference

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29 September 2017

Direct sequencing of the human microbiome readily reveals community differences

1 reference

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29 September 2017

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

PyNAST: a flexible tool for aligning sequences to a template alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Metabolomics reveals metabolic biomarkers of Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Economic evaluation of Johne's disease control programs implemented on six Michigan dairy farms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

The relationship between intestinal microbiota and the central nervous system in normal gastrointestinal function and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Evidence for age susceptibility of cattle to Johne's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Worlds within worlds: evolution of the vertebrate gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Mycobacterium avium subspecies paratuberculosis infection in cases of irritable bowel syndrome and comparison with Crohn's disease and Johne's disease: common neural and immune pathogenicities

1 reference

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29 September 2017

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Experimental challenge models for Johne's disease: a review and proposed international guidelines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Johne's disease in Canada Part I: clinical symptoms, pathophysiology, diagnosis, and prevalence in dairy herds.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

UniFrac: a new phylogenetic method for comparing microbial communities

1 reference

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29 September 2017

Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD.

1 reference

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Mycobacterium paratuberculosis and the bovine immune system

1 reference

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29 September 2017

Comparative study of bacterial groups within the human cecal and fecal microbiota

1 reference

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Progress towards understanding the spread, detection and control of Mycobacterium avium subsp paratuberculosis in animal populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

29 September 2017

KEGG: kyoto encyclopedia of genes and genomes

1 reference

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29 September 2017

Import and metabolism of glutathione by Streptococcus mutans

1 reference

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Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

1 reference

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Shedding patterns of dairy calves experimentally infected with Mycobacterium avium subspecies paratuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

28 June 2018

Dose-dependent interferon-gamma release in dairy calves experimentally infected with Mycobacterium avium subspecies paratuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4814471

28 June 2018

Gene expression profiling and putative biomarkers of calves 3 months after infection with Mycobacterium avium subspecies paratuberculosis

1 reference

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5 September 2018

EMerging BiomARKers in Inflammatory Bowel Disease (EMBARK) study identifies fecal calprotectin, serum MMP9, and serum IL-22 as a novel combination of biomarkers for Crohn's disease activity: role of cross-sectional imaging

1 reference

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Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives.

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Incidence of Clostridium difficile infection in inflammatory bowel disease.

1 reference

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5 September 2018

Mucosal immune response in cattle with subclinical Johne's disease.

1 reference

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5 September 2018

Role of M Cells and Macrophages in the Entrance ofMycobacterium paratuberculosisinto Domes of Ileal Peyer's Patches in Calves

1 reference

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5 September 2018

Use of Ranks in One-Criterion Variance Analysis

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https://api.crossref.org/works/10.3389%2FFMICB.2016.00426

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1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

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IL-6 is required for the development of Th1 cell-mediated murine colitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

based on heuristic

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Proteomic analysis of plasma from Holstein cows testing positive for Mycobacterium avium subsp. paratuberculosis (MAP)

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathological evaluation of paratuberculosis in naturally infected cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Economic impact of reduced milk production associated with Johne's disease on dairy operations in the USA

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

based on heuristic

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Changes in management practices and apparent prevalence on Canadian dairy farms participating in a voluntary risk assessment-based Johne's disease control program

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tissue predilection sites and effect of dose on Mycobacterium avium subs. paratuberculosis organism recovery in a short-term bovine experimental oral infection model

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

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Constitutive STAT3 Activation in Intestinal T Cells from Patients with Crohn's Disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/27065983

12 December 2020

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Identifiers

10.3389/FMICB.2016.00426

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

0 references

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