Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36792463)
Watch
English
Ecology of marine Bacteroidetes: a comparative genomics approach
scientific article published on 10 January 2013
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
title
Ecology of marine Bacteroidetes: a comparative genomics approach
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
main subject
comparative genomics
1 reference
based on heuristic
inferred from title
author
Silvia G. Acinas
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
Jose M. González
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
Carlos Pedrós-Alió
series ordinal
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
Jarone Pinhassi
series ordinal
4
object named as
Jarone Pinhassi
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
author name string
Beatriz Fernández-Gómez
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
Michael Richter
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
Margarete Schüler
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
publication date
10 January 2013
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
published in
The ISME Journal
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
volume
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
issue
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
page(s)
1026-1037
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
maintained by WikiProject
WikiProject Ecology
1 reference
based on heuristic
inferred from title
cites work
Patterns and architecture of genomic islands in marine bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genomic and functional adaptation in surface ocean planktonic prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Detecting genomic islands using bioinformatics approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Gene amplification and adaptive evolution in bacteria.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Assembling the marine metagenome, one cell at a time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
IslandViewer: an integrated interface for computational identification and visualization of genomic islands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
InterPro: the integrative protein signature database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
A rapid bootstrap algorithm for the RAxML Web servers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Proteorhodopsins: an array of physiological roles?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
The surprisingly diverse ways that prokaryotes move
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
The Pfam protein families database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
High local and global diversity of Flavobacteria in marine plankton
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Global patterns of diversity and community structure in marine bacterioplankton.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Isolation of Typical Marine Bacteria by Dilution Culture: Growth, Maintenance, and Characteristics of Isolates under Laboratory Conditions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Evidence of a large novel gene pool associated with prokaryotic genomic islands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genome Streamlining in a Cosmopolitan Oceanic Bacterium
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Changes in bacterioplankton composition under different phytoplankton regimens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Improved prediction of signal peptides: SignalP 3.0
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Comparative genomics of gene-family size in closely related bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
GenDB--an open source genome annotation system for prokaryote genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
A genomic perspective on protein families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
29 September 2017
Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
27 June 2018
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
27 June 2018
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
5 September 2018
The ecology of Cytophaga-Flavobacteria in aquatic environments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635232
retrieved
5 September 2018
Bacterial colonization of transparent exopolymeric particles in mesocosms under different turbulence intensities and nutrient conditions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FISMEJ.2012.169
retrieved
21 January 2018
Identifiers
DOI
10.1038/ISMEJ.2012.169
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
PMC publication ID
3635232
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
PubMed publication ID
23303374
1 reference
stated in
Europe PubMed Central
PMC publication ID
3635232
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23303374%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
ResearchGate publication ID
234099053
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit