(Q36814248)

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Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome

scientific article published on 26 March 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

1 reference

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Joanna Sztuba-Solińska

1

object named as

Joanna Sztuba-Solinska

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

author name string

Tadahisa Teramoto

2

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Jason W Rausch

3

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Bruce A Shapiro

4

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Radhakrishnan Padmanabhan

5

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Stuart F J Le Grice

6

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

language of work or name

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publication date

26 March 2013

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

16 August 2017

41

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Europe PubMed Central

PMC publication ID

16 August 2017

9

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

5075-5089

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

1 reference

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Novel ATP-independent RNA annealing activity of the dengue virus NS3 helicase

1 reference

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Automated 3D structure composition for large RNAs

1 reference

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Composition of the sequence downstream of the dengue virus 5' cyclization sequence (dCS) affects viral RNA replication

1 reference

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Attenuation of loop-receptor interactions with pseudoknot formation

1 reference

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1 reference

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Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication

1 reference

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NF90 binds the dengue virus RNA 3' terminus and is a positive regulator of dengue virus replication

1 reference

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RNA sequences and structures required for the recruitment and activity of the dengue virus polymerase

1 reference

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A balance between circular and linear forms of the dengue virus genome is crucial for viral replication

1 reference

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An RNA Pseudoknot Is Required for Production of Yellow Fever Virus Subgenomic RNA by the Host Nuclease XRN1

1 reference

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Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication

1 reference

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Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus

1 reference

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MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

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Translational regulation by the 3' untranslated region of the dengue type 2 virus genome

1 reference

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PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots

1 reference

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1 reference

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Accurate SHAPE-directed RNA structure determination

1 reference

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29 September 2017

A Highly Structured, Nuclease-Resistant, Noncoding RNA Produced by Flaviviruses Is Required for Pathogenicity

1 reference

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29 September 2017

Conformational Changes in the Solution Structure of the Dengue Virus 5' End in the Presence and Absence of the 3' Untranslated Region

1 reference

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29 September 2017

Structural and Functional Studies of the Promoter Element for Dengue Virus RNA Replication

1 reference

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29 September 2017

Resistance to RevM10 inhibition reflects a conformational switch in the HIV-1 Rev response element

1 reference

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29 September 2017

Genome cyclization as strategy for flavivirus RNA replication

1 reference

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29 September 2017

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication

1 reference

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RNA pseudoknots and the regulation of protein synthesis

1 reference

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29 September 2017

Structural domains within the 3' untranslated region of Turnip crinkle virus.

1 reference

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29 September 2017

Identification of Mutated Cyclization Sequences That Permit Efficient Replication of West Nile Virus Genomes: Use in Safer Propagation of a Novel Vaccine Candidate

1 reference

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High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

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Functional analysis of dengue virus cyclization sequences located at the 5' and 3'UTRs

1 reference

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Viral RNA pseudoknots: versatile motifs in gene expression and replication

1 reference

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29 September 2017

Secondary structure of dengue virus type 4 3' untranslated region: impact of deletion and substitution mutations

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A second, non-canonical RNA-dependent RNA polymerase in SARS Coronavirus

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Mosquito La protein binds to the 3' untranslated region of the positive and negative polarity dengue virus RNAs and relocates to the cytoplasm of infected cells

1 reference

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1 reference

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Role of RNA structures present at the 3'UTR of dengue virus on translation, RNA synthesis, and viral replication

1 reference

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Control of Translation by the 5'- and 3'-Terminal Regions of the Dengue Virus Genome

1 reference

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Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

1 reference

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1 reference

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Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting

1 reference

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1 reference

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1 reference

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De novo synthesis of RNA by the dengue virus RNA-dependent RNA polymerase exhibits temperature dependence at the initiation but not elongation phase

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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27 June 2018

Architecture of a gamma retroviral genomic RNA dimer.

1 reference

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5 September 2018

Initiation of protein synthesis from the A site of the ribosome

1 reference

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5 September 2018

Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs.

1 reference

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5 September 2018

Predicting U-turns in ribosomal RNA with comparative sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA folding pathway functional intermediates: their prediction and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23531545

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT203

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

0 references

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