(Q36859258)

English

Chromatin profiling across the human tumour necrosis factor gene locus reveals a complex, cell type-specific landscape with novel regulatory elements

scientific article published on 24 July 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Chromatin profiling across the human tumour necrosis factor gene locus reveals a complex, cell type-specific landscape with novel regulatory elements (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

0 references

Claire Vandiedonck

object named as

Claire Vandiedonck

3

0 references

Julian C Knight

object named as

Julian C Knight

4

0 references

author name string

Jennifer M Taylor

1

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Kate Wicks

2

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

language of work or name

0 references

publication date

24 July 2008

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

36

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

15

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

4845-4862

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers

1 reference

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1 reference

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Chromatin modifications and their function

1 reference

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Enhancer identification through comparative genomics

1 reference

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ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements

1 reference

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Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites

1 reference

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DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

1 reference

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A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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High-throughput localization of functional elements by quantitative chromatin profiling

1 reference

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Complete MHC haplotype sequencing for common disease gene mapping

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Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

1 reference

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TNF and phorbol esters induce lymphotoxin-beta expression through distinct pathways involving Ets and NF-kappa B family members

1 reference

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Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

1 reference

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Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse

1 reference

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T Cell-Specific Expression of the Human TNF-α Gene Involves a Functional and Highly Conserved Chromatin Signature in Intron 3

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Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data

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Identification of I kappa BL as the second major histocompatibility complex-linked susceptibility locus for rheumatoid arthritis

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Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300.

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Inducer-specific enhanceosome formation controls tumor necrosis factor alpha gene expression in T lymphocytes

1 reference

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

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A distinct bipartite motif is required for the localization of inhibitory kappaB-like (IkappaBL) protein to nuclear speckles

1 reference

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A second susceptibility gene for developing rheumatoid arthritis in the human MHC is localized within a 70-kb interval telomeric of the TNF genes in the HLA class III region

1 reference

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A lipopolysaccharide-specific enhancer complex involving Ets, Elk-1, Sp1, and CREB binding protein and p300 is recruited to the tumor necrosis factor alpha promoter in vivo

1 reference

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A stimulus-specific role for CREB-binding protein (CBP) in T cell receptor-activated tumor necrosis factor alpha gene expression

1 reference

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Stimulus-specific assembly of enhancer complexes on the tumor necrosis factor alpha gene promoter

1 reference

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Regulation of DNA binding by Rel/NF-kappaB transcription factors: structural views

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Human tumor necrosis factor-alpha gene 3' untranslated region confers inducible toxin responsiveness to homologous promoter in monocytic THP-1 cells

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1 reference

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Similarities and differences between human and murine TNF promoters in their response to lipopolysaccharide

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Complex NF-kappaB interactions at the distal tumor necrosis factor promoter region in human monocytes.

1 reference

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Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA

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Functional analysis of the lymphotoxin-beta promoter. Sequence requirements for PMA activation.

1 reference

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Tumor necrosis factor, other cytokines and disease

1 reference

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Human tumor necrosis factor alpha gene regulation by virus and lipopolysaccharide

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Chromatin structure and DNase I hypersensitivity in the transcriptionally active and inactive porcine tumor necrosis factor gene locus

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18653526

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inferred from PubMed ID database lookup

[Chromatin organization in the tumor necrosis factor/lymphotoxin gene locus: correlation with tissue-specific expression]

1 reference

https://pubmed.ncbi.nlm.nih.gov/18653526

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based on heuristic

inferred from PubMed ID database lookup

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inferred from PubMed ID database lookup

The formation and function of DNase I hypersensitive sites in the process of gene activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18653526

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKN444

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

0 references

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