(Q36940065)

17 August 2017

Methods for quantifying T cell receptor binding affinities and thermodynamics (English)

1 reference

17 August 2017

0 references

4

Brian M Baker

1 reference

17 August 2017

Kurt H Piepenbrink

1

1 reference

17 August 2017

Brian E Gloor

series ordinal

2

1 reference

17 August 2017

Kathryn M Armstrong

series ordinal

3

1 reference

17 August 2017

language of work or name

English

0 references

publication date

13 November 2009

1 reference

17 August 2017

Methods in Enzymology

1 reference

17 August 2017

466

1 reference

17 August 2017

359-381

1 reference

The molecular basis of TCR germline bias for MHC is surprisingly simple

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Different Thermodynamic Binding Mechanisms and Peptide Fine Specificities Associated with a Panel of Structurally Similar High-Affinity T Cell Receptors † ‡

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Survey of the year 2007 commercial optical biosensor literature

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

TCR-MHC docking orientation: natural selection, or thymic selection?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Thermodynamics of T-cell receptor-peptide/MHC interactions: progress and opportunities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Kinetic evidence for a ligand-binding-induced conformational transition in the T cell receptor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Single MHC Mutation Eliminates Enthalpy Associated with T Cell Receptor Binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

A comprehensive calorimetric investigation of an entropically driven T cell receptor-peptide/major histocompatibility complex interaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Polyspecificity of T cell and B cell receptor recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Analysis of interactions in a tapasin/class I complex provides a mechanism for peptide selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

How TCRs bind MHCs, peptides, and coreceptors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Complete thermodynamic characterization of the multiple protonation equilibria of the aminoglycoside antibiotic paromomycin: a calorimetric and natural abundance 15N NMR study.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Structural and kinetic basis for heightened immunogenicity of T cell vaccines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Evidence that structural rearrangements and/or flexibility during TCR binding can contribute to T cell activation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

A correlation between TCR Valpha docking on MHC and CD8 dependence: implications for T cell selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

A structural basis for immunodominant human T cell receptor recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Experimental pK(a) values of buried residues: analysis with continuum methods and role of water penetration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Prediction of binding energetics from structure using empirical parameterization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Interpreting kinetic rate constants from optical biosensor data recorded on a decaying surface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Assembly, specific binding, and crystallization of a human TCR-alphabeta with an antigenic Tax peptide from human T lymphotropic virus type 1 and the class I MHC molecule HLA-A2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Structure of the complex between human T-cell receptor, viral peptide and HLA-A2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Coupling of local folding to site-specific binding of proteins to DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Kinetics of T-cell receptor binding to peptide/I-Ek complexes: correlation of the dissociation rate with T-cell responsiveness

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Rapid measurement of binding constants and heats of binding using a new titration calorimeter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

HLA-A2-peptide complexes: refolding and crystallization of molecules expressed in Escherichia coli and complexed with single antigenic peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

T cell receptor recognition via cooperative conformational plasticity.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Directed evolution of human T-cell receptors with picomolar affinities by phage display.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Design of soluble recombinant T cell receptors for antigen targeting and T cell inhibition.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Peptide 'Velcro': design of a heterodimeric coiled coil.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Strategic mutations in the class I major histocompatibility complex HLA-A2 independently affect both peptide binding and T cell receptor recognition

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

On the value of c: can low affinity systems be studied by isothermal titration calorimetry?

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Thermodynamic and Kinetic Analysis of a Peptide−Class I MHC Interaction Highlights the Noncovalent Nature and Conformational Dynamics of the Class I Heterotrimer

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Fluorescence anisotropy in pharmacologic screening

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Van't Hoff and calorimetric enthalpies from isothermal titration calorimetry: are there significant discrepancies?

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Directed evolution of a stable scaffold for T-cell receptor engineering.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Ligand recognition by alpha beta T cell receptors

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686473

Dissecting the energetics of a protein-protein interaction: the binding of ovomucoid third domain to elastase

4 September 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Critical factors in the development of fluorescence polarization-based peptide binding assays: an equilibrium study monitoring specific peptide binding to soluble HLA-A*0201

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

How a single T cell receptor recognizes both self and foreign MHC

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

T cell receptor-MHC class I peptide interactions: affinity, kinetics, and specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Two different T cell receptors use different thermodynamic strategies to recognize the same peptide/MHC ligand

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Use of fluorescence polarization to monitor MHC-peptide interactions in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Calorimetric methods for interpreting protein-ligand interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Large heat capacity change in a protein-monovalent cation interaction

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

van't Hoff and calorimetric enthalpies II: effects of linked equilibria

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Improving biosensor analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Protein−Protein Interactions: Interface Structure, Binding Thermodynamics, and Mutational Analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Isothermal titration calorimetry at very low c

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

TCR binding to peptide-MHC stabilizes a flexible recognition interface

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2966015-8

7 January 2021

Fluorescence polarization/anisotropy approaches to study protein-ligand interactions: effects of errors and uncertainties

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21609868

12 December 2020

inferred from PubMed ID database lookup

Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21609868

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/S0076-6879(09)66015-8

1 reference

17 August 2017

1 reference

17 August 2017

1 reference