(Q37021556)

17 August 2017

DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences. (English)

1 reference

convolutional neural network

17 August 2017

0 references

0 references

1 reference

based on heuristic

inferred from title

recurrent neural network

1 reference

Daniel Quang

1

1 reference

PMCID

4914104

17 August 2017

Xiaohui Xie

series ordinal

2

1 reference

PMCID

4914104

17 August 2017

language of work or name

English

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publication date

15 April 2016

1 reference

17 August 2017

Nucleic Acids Research

1 reference

17 August 2017

44

1 reference

17 August 2017

11

1 reference

17 August 2017

e107

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

17 August 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

1 reference

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Predicting effects of noncoding variants with deep learning-based sequence model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

A method to predict the impact of regulatory variants from DNA sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

RSAT 2015: Regulatory Sequence Analysis Tools.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Integrative analysis of 111 reference human epigenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

DANN: a deep learning approach for annotating the pathogenicity of genetic variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Enhanced regulatory sequence prediction using gapped k-mer features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

GRASP: analysis of genotype-phenotype results from 1390 genome-wide association studies and corresponding open access database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

EXTREME: an online EM algorithm for motif discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

An integrated map of genetic variation from 1,092 human genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

An integrated encyclopedia of DNA elements in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Quantifying similarity between motifs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Motif signatures in stretch enhancers are enriched for disease-associated genetic variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Framewise phoneme classification with bidirectional LSTM and other neural network architectures.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914104

Gene expression inference with deep learning.

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW226

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW226

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

PMCID

4914104