(Q37040246)

17 August 2017

Compo: composite motif discovery using discrete models (English)

1 reference

17 August 2017

1

Geir Kjetil Sandve

1 reference

17 August 2017

3

Finn Drabløs

1 reference

17 August 2017

Osman Abul

2

1 reference

17 August 2017

8 December 2008

1 reference

17 August 2017

1 reference

17 August 2017

9

1 reference

17 August 2017

527

1 reference

Creative Commons Attribution 2.0 Generic

17 August 2017

start time

1 December 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-527

0 references

cites work

Assessment of composite motif discovery methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

A survey of motif discovery methods in an integrated framework

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

De novo cis-regulatory module elicitation for eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Assessing computational tools for the discovery of transcription factor binding sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Identifying combinatorial regulation of transcription factors and binding motifs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Computational detection of cis -regulatory modules.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

The evolution of transcriptional regulation in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Detection of cis-element clusters in higher eukaryotic DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

A predictive model for regulatory sequences directing liver-specific transcription.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

The value of prior knowledge in discovering motifs with MEME

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Identification of regulatory regions which confer muscle-specific gene expression.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

REDfly: a Regulatory Element Database for Drosophila.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Logos: a modular bayesian model for de novo motif detection.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Searching for statistically significant regulatory modules.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

A probabilistic method to detect regulatory modules.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614996

Identifying target sites for cooperatively binding factors

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19063744

12 December 2020

inferred from PubMed ID database lookup

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19063744

12 December 2020

inferred from PubMed ID database lookup

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19063744

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-9-527

1 reference

journals/bmcbi/SandveAD08

17 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1037652661

0 references

Fatcat ID

release_ow2oo63lbndq5ihmzbnuf4mt44

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ow2oo63lbndq5ihmzbnuf4mt44

24 November 2022

mapped directly with Wikidata item

PMC publication ID

2614996

1 reference

PMC publication ID

2614996

17 August 2017

PubMed publication ID

19063744

1 reference

PMC publication ID

2614996