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TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
title
TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
main subject
open-source software
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author
Stein Aerts
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
Peter Van Loo
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
Gert Thijs
series ordinal
3
1 reference
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Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
Yves Moreau
series ordinal
6
object named as
Yves Moreau
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
Bart De Moor
series ordinal
7
object named as
Bart De Moor
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
author name string
Herbert Mayer
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
Rainer de Martin
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
language of work or name
English
0 references
publication date
1 July 2005
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
volume
33
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
issue
Web Server issue
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
page(s)
W393-6
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
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PubMed Central
reference URL
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Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
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Transcriptional control in the segmentation gene network of Drosophila
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7 April 2017
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7 April 2017
Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements
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7 April 2017
Human-mouse alignments with BLASTZ
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7 April 2017
Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo
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7 April 2017
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
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7 April 2017
Scanning Human Gene Deserts for Long-Range Enhancers
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7 April 2017
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
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7 April 2017
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
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7 April 2017
TRANSFAC: an integrated system for gene expression regulation
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7 April 2017
Exploiting human--fish genome comparisons for deciphering gene regulation
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28 September 2017
Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
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28 September 2017
Applied bioinformatics for the identification of regulatory elements
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28 September 2017
Computational detection of cis -regulatory modules.
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28 September 2017
FootPrinter: A program designed for phylogenetic footprinting
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 September 2017
Comparative genomics: genome-wide analysis in metazoan eukaryotes
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28 September 2017
Toucan: deciphering the cis-regulatory logic of coregulated genes.
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 September 2017
AVID: A global alignment program
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28 September 2017
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
retrieved
28 September 2017
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
retrieved
28 November 2018
Deciphering regulatory patterns of inflammatory gene expression from interleukin-1-stimulated human endothelial cells
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 November 2018
A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 November 2018
CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 November 2018
Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
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28 November 2018
Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
retrieved
28 November 2018
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
retrieved
28 November 2018
Human-mouse genome comparisons to locate regulatory sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160115
retrieved
28 November 2018
Identifiers
DOI
10.1093/NAR/GKI354
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
DBLP publication ID
journals/nar/AertsLTMMMM05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
1160115
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
PubMed publication ID
15980497
1 reference
stated in
Europe PubMed Central
PMC publication ID
1160115
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15980497%20AND%20SRC:MED&resulttype=core&format=json
retrieved
13 January 2020
ResearchGate publication ID
7762367
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