(Q37060991)

18 August 2017

The genetic regulatory signature of type 2 diabetes in human skeletal muscle (English)

1 reference

18 August 2017

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15

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18 August 2017

23

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18 August 2017

28

Jaakko Tuomilehto

0 references

Francis Collins

31

Francis S Collins

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Narisu Narisu

9

Narisu Narisu

1 reference

18 August 2017

Brooke N Wolford

6

0 references

John P Didion

John P Didion

8

0 references

Heikki A. Koistinen

Heikki A Koistinen

29

0 references

Karen L Mohlke

26

Karen L Mohlke

1 reference

18 August 2017

21

Gregory E Crawford

1 reference

18 August 2017

27

Markku Laakso

1 reference

18 August 2017

30

Michael Boehnke

1 reference

18 August 2017

12

Anne U Jackson

1 reference

18 August 2017

10

Heather M Stringham

1 reference

18 August 2017

14

Lori L Bonnycastle

1 reference

18 August 2017

Ricardo D'Oliveira Albanus

18

Ricardo D'Oliveira Albanus

1 reference

18 August 2017

Laura J Scott

1

1 reference

18 August 2017

Michael R Erdos

2

1 reference

18 August 2017

Jeroen R Huyghe

3

1 reference

18 August 2017

Ryan P Welch

4

1 reference

18 August 2017

Andrew T Beck

5

1 reference

18 August 2017

Peter S Chines

7

1 reference

18 August 2017

D Leland Taylor

11

1 reference

18 August 2017

Swarooparani Vadlamudi

13

1 reference

18 August 2017

Jouko Saramies

16

1 reference

18 August 2017

Jouko Sundvall

17

1 reference

18 August 2017

Anna Kiseleva

19

1 reference

18 August 2017

John Hensley

20

1 reference

18 August 2017

Hui Jiang

22

1 reference

18 August 2017

Richard M Watanabe

24

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18 August 2017

Timo A Lakka

25

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18 August 2017

Stephen C J Parker

32

1 reference

18 August 2017

language of work or name

English

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publication date

29 June 2016

1 reference

18 August 2017

Nature Communications

1 reference

18 August 2017

7

1 reference

18 August 2017

11764

1 reference

Creative Commons Attribution 4.0 International

18 August 2017

start time

29 June 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms11764

0 references

cites work

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RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power

29 September 2017

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JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

29 September 2017

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Bacterial infection remodels the DNA methylation landscape of human dendritic cells

29 September 2017

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QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments

29 September 2017

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Motif signatures in stretch enhancers are enriched for disease-associated genetic variants

29 September 2017

1 reference

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Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants

29 September 2017

1 reference

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Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

29 September 2017

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29 September 2017

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GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach

29 September 2017

1 reference

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Integrative analysis of 111 reference human epigenomes

29 September 2017

1 reference

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mTOR signaling in cellular and organismal energetics

29 September 2017

1 reference

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

29 September 2017

1 reference

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minimac2: faster genotype imputation

29 September 2017

1 reference

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HTSeq--a Python framework to work with high-throughput sequencing data

29 September 2017

1 reference

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Calcium signaling in insulin action on striated muscle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Identification of a regulatory variant that binds FOXA1 and FOXA2 at the CDC123/CAMK1D type 2 diabetes GWAS locus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Global view of enhancer-promoter interactome in human cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Increased interaction with insulin receptor substrate 1, a novel abnormality in insulin resistance and type 2 diabetes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Pathophysiology and treatment of type 2 diabetes: perspectives on the past, present, and future

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Statistical Modeling of RNA-Seq Data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Expression of phosphofructokinase in skeletal muscle is influenced by genetic variation and associated with insulin sensitivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Super-enhancers in the control of cell identity and disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Transcriptome and genome sequencing uncovers functional variation in humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Selective inhibition of tumor oncogenes by disruption of super-enhancers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Master transcription factors and mediator establish super-enhancers at key cell identity genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

DNA-binding specificities of human transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

STAR: ultrafast universal RNA-seq aligner

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

GENCODE: the reference human genome annotation for The ENCODE Project

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

An integrated encyclopedia of DNA elements in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Detecting differential usage of exons from RNA-seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Hydrophobic residues in small ankyrin 1 participate in binding to obscurin.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Integrity of the network sarcoplasmic reticulum in skeletal muscle requires small ankyrin 1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Synthetic spike-in standards for RNA-seq experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

REVIGO summarizes and visualizes long lists of gene ontology terms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Nuclear receptors TR2 and TR4 recruit multiple epigenetic transcriptional corepressors that associate specifically with the embryonic β-type globin promoters in differentiated adult erythroid cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Mapping and analysis of chromatin state dynamics in nine human cell types

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Comparative epigenomic analysis of murine and human adipogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Association of 18 confirmed susceptibility loci for type 2 diabetes with indices of insulin release, proinsulin conversion, and insulin sensitivity in 5,327 nondiabetic Finnish men.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Fast and accurate short read alignment with Burrows-Wheeler transform

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

The TR2 and TR4 orphan nuclear receptors repress Gata1 transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Mapping the binding site on small ankyrin 1 for obscurin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Population structure and eigenanalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

siRNA-based gene silencing reveals specialized roles of IRS-1/Akt2 and IRS-2/Akt1 in glucose and lipid metabolism in human skeletal muscle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Promoter features related to tissue specificity as measured by Shannon entropy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Statistical significance for genomewide studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Binding of an ankyrin-1 isoform to obscurin suggests a molecular link between the sarcoplasmic reticulum and myofibrils in striated muscles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Quality of life along the diabetes continuum: a cross-sectional view of health-related quality of life and general health status in middle-aged and older Finns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Long-range LD can confound genome scans in admixed populations

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Mapping genes for NIDDM. Design of the Finland-United States Investigation of NIDDM Genetics (FUSION) Study

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4931250

Diet, fitness and metabolic syndrome – The DR’s EXTRA Study

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS11764

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11764

21 January 2018

Identifiers

DOI

10.1038/NCOMMS11764

1 reference

18 August 2017

0 references

1 reference

18 August 2017

PubMed publication ID

27353450

1 reference