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English
Epigenetic layers and players underlying neurodevelopment.
scientific article published on 31 May 2013
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2 March 2020
title
Epigenetic layers and players underlying neurodevelopment
(English)
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2 March 2020
author
Janine M. LaSalle
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1
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3735843
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2 March 2020
Weston Powell
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2
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3735843
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2 March 2020
author name string
Dag H Yasui
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3
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2 March 2020
publication date
31 May 2013
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2 March 2020
published in
Trends in Neurosciences
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3735843
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2 March 2020
volume
36
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2 March 2020
issue
8
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2 March 2020
page(s)
460-470
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2 March 2020
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The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
A human B cell methylome at 100-base pair resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Chromosome 15q11-13 duplication syndrome brain reveals epigenetic alterations in gene expression not predicted from copy number.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Chromatin and nuclear architecture in the nervous system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Specific expression of long noncoding RNAs in the mouse brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Homeostatic regulation of MeCP2 expression by a CREB-induced microRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
RNA maps reveal new RNA classes and a possible function for pervasive transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Covalent modification of DNA regulates memory formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Gene body-specific methylation on the active X chromosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of cornelia de Lange syndrome with predominant mental retardation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Chromosome territories--a functional nuclear landscape.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Duplication of the MECP2 region is a frequent cause of severe mental retardation and progressive neurological symptoms in males
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
The key to development: interpreting the histone code?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Homologous pairing of 15q11-13 imprinted domains in brain is developmentally regulated but deficient in Rett and autism samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
DNA Methylation-Related Chromatin Remodeling in Activity-Dependent Bdnf Gene Regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Identification of a polymorphic, neuron-specific chromatin remodeling complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Metastable epialleles in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
The organization of replication and transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
ATRX encodes a novel member of the SNF2 family of proteins: mutations point to a common mechanism underlying the ATR-X syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Imprint switching on human chromosome 15 may involve alternative transcripts of the SNRPN gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Deletions of a differentially methylated CpG island at the SNRPN gene define a putative imprinting control region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Mutations in a putative global transcriptional regulator cause X-linked mental retardation with alpha-thalassemia (ATR-X syndrome)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Rubinstein-Taybi syndrome caused by mutations in the transcriptional co-activator CBP
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
29 September 2017
Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
27 June 2018
Cortical DNA methylation maintains remote memory
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
27 June 2018
Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
27 June 2018
Activity-dependent suppression of miniature neurotransmission through the regulation of DNA methylation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
27 June 2018
Large-scale structure of genomic methylation patterns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
27 June 2018
The dynamic architecture of Hox gene clusters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
4 September 2018
Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
4 September 2018
Non-coding RNAs in polycomb/trithorax regulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
4 September 2018
Identification and characterization of the TRIP8 and REEP3 genes on chromosome 10q21.3 as novel candidate genes for autism.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
4 September 2018
Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735843
retrieved
4 September 2018
Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23731492
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
An imprinted antisense RNA overlaps UBE3A and a second maternally expressed transcript
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23731492
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.TINS.2013.05.001
1 reference
stated in
Europe PubMed Central
PMC publication ID
3735843
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23731492%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PMC publication ID
3735843
1 reference
stated in
Europe PubMed Central
PMC publication ID
3735843
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23731492%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PubMed publication ID
23731492
1 reference
stated in
Europe PubMed Central
PMC publication ID
3735843
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23731492%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
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