(Q37100344)

18 August 2017

Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation (English)

1 reference

18 August 2017

1 reference

Jonathan Berthon

1

1 reference

18 August 2017

Diego Cortez

series ordinal

2

1 reference

18 August 2017

Patrick Forterre

series ordinal

3

1 reference

18 August 2017

language of work or name

1 reference

9 April 2008

1 reference

18 August 2017

1 reference

18 August 2017

9

1 reference

18 August 2017

4

1 reference

18 August 2017

R71

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2008-9-4-r71

18 August 2017

0 references

cites work

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Structural insights into a new homodimeric self-activated GTPase family

14 September 2017

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Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp.

14 September 2017

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

14 September 2017

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14 September 2017

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14 September 2017

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Photoreactivation of DNA by an archaeal nucleoprotein Sso7d

14 September 2017

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In vitro and in vivo evidence of metallopanstimulin-1 in gastric cancer progression and tumorigenicity

14 September 2017

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Double-stranded RNA-dependent protein kinase phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 mediates apoptosis

14 September 2017

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GINS, a central nexus in the archaeal DNA replication fork

14 September 2017

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The Nudix hydrolase superfamily

14 September 2017

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DNA end-directed and processive nuclease activities of the archaeal XPF enzyme

14 September 2017

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Evolutionary and functional genomics of the Archaea

14 September 2017

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14 September 2017

The promiscuous primase

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Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members

14 September 2017

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Archaeal Hel308 helicase targets replication forks in vivo and in vitro and unwinds lagging strands

14 September 2017

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An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences

14 September 2017

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Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

14 September 2017

1 reference

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Chromosomal organization is shaped by the transcription regulatory network

14 September 2017

1 reference

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The euryarchaeota, nature's medium for engineering of single-stranded DNA-binding proteins.

14 September 2017

1 reference

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

14 September 2017

1 reference

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Mass spectrometry and the search for moonlighting proteins.

14 September 2017

1 reference

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The DNA-polymerase-X family: controllers of DNA quality?

14 September 2017

1 reference

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Ribosome synthesis meets the cell cycle

14 September 2017

1 reference

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Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination

14 September 2017

1 reference

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Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox

14 September 2017

1 reference

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A bipolar DNA helicase gene, herA, clusters with rad50, mre11 and nurA genes in thermophilic archaea

14 September 2017

1 reference

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The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism

14 September 2017

1 reference

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An exosome-like complex in Sulfolobus solfataricus

14 September 2017

1 reference

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Comparative genomics of Archaea: how much have we learned in six years, and what's next?

14 September 2017

1 reference

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Archaeal DNA repair: paradigms and puzzles

14 September 2017

1 reference

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Phylogenomics of type II DNA topoisomerases

14 September 2017

1 reference

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MBDin, a novel MBD2-interacting protein, relieves MBD2 repression potential and reactivates transcription from methylated promoters.

14 September 2017

1 reference

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Yph1p, an ORC-interacting protein: potential links between cell proliferation control, DNA replication, and ribosome biogenesis.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Identification of genes that are associated with DNA repeats in prokaryotes

14 September 2017

1 reference

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The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

14 September 2017

1 reference

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Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

14 September 2017

1 reference

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A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

InBase: the Intein Database

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Replication protein A in Pyrococcus furiosus is involved in homologous DNA recombination

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

The COG database: new developments in phylogenetic classification of proteins from complete genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Biochemical characterization of the hjc holliday junction resolvase of Pyrococcus furiosus

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

A novel cytoplasmic GTPase XAB1 interacts with DNA repair protein XPA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Who's your neighbor? New computational approaches for functional genomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Specific interaction between DNA polymerase II (PolD) and RadB, a Rad51/Dmc1 homolog, in Pyrococcus furiosus

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum deltaH.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Conservation of gene order: a fingerprint of proteins that physically interact

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

A genomic perspective on protein families

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

A novel DNA polymerase in the hyperthermophilic archaeon,Pyrococcus furiosus: gene cloning, expression, and characterization

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Functional analysis of Rrp7p, an essential yeast protein involved in pre-rRNA processing and ribosome assembly

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

A growth factor-inducible gene encodes a novel nuclear protein with zinc finger structure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Metallopanstimulin gene product produced in a baculovirus expression system is a nuclear phosphoprotein that binds to DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Multiple sequence alignment with hierarchical clustering

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Physiological responses of the hyperthermophilic archaeon "Pyrococcus abyssi" to DNA damage caused by ionizing radiation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Structural analysis of the plasmid pTA1 isolated from the thermoacidophilic archaeon Thermoplasma acidophilum.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Operon formation is driven by co-regulation and not by horizontal gene transfer

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

NurA, a novel 5'-3' nuclease gene linked to rad50 and mre11 homologs of thermophilic Archaea

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Computational genetics: finding protein function by nonhomology methods.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

On the origin of operons and their possible role in evolution toward thermophily

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA degradation triggered by genotoxic stress

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Identification and characterization of the Nudix hydrolase from the Archaeon, Methanococcus jannaschii, as a highly specific ADP-ribose pyrophosphatase.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

PCNA activates the Holliday junction endonuclease Hjc.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

The archaeal Hjm helicase has recQ-like functions, and may be involved in repair of stalled replication fork.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometry

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Cooperation of the N-terminal Helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Identification of replication origins in the genome of the methanogenic archaeon, Methanocaldococcus jannaschii

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Transcriptional fidelity and proofreading in Archaea and implications for the mechanism of TFS-induced RNA cleavage.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

In vitro phosphorylation of initiation factor 2 alpha (aIF2 alpha) from hyperthermophilic archaeon Pyrococcus horikoshii OT3.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

In the thermophilic archaeon Sulfolobus solfataricus a DNA-binding protein is in vitro (Adpribosyl)ated

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643942

Gene order is not conserved in bacterial evolution

3 September 2018

1 reference

12 December 2020

Comprehensive search for DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus

1 reference

12 December 2020

Transcription factor S, a cleavage induction factor of the archaeal RNA polymerase

1 reference

12 December 2020

Exploitation of gene context

1 reference

12 December 2020

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

1 reference

12 December 2020

Mining archaeal proteomes for eukaryotic proteins with novel functions: the PACE case

1 reference

12 December 2020

Identification of putative chromosomal origins of replication in Archaea

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2008-9-4-R71

1 reference

Dimensions Publication ID

18 August 2017

0 references

1 reference

18 August 2017

1 reference