(Q37130581)

English

Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries

scientific article published on May 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries (English)

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

author name string

Lisa Eidenschink

1

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Brandon L Kier

2

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Kelly N L Huggins

3

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Niels H Andersen

4

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

language of work or name

0 references

publication date

1 May 2009

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

75

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

2

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

308-322

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

The Trp-cage: optimizing the stability of a globular miniprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Geometry of nonbonded interactions involving planar groups in proteins

1 reference

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14 September 2017

NMR study and molecular dynamics simulations of optimized beta-hairpin fragments of protein G.

1 reference

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14 September 2017

Model systems for beta-hairpins and beta-sheets

1 reference

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14 September 2017

Minimization and optimization of designed beta-hairpin folds

1 reference

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14 September 2017

Interstrand pairing patterns in beta-barrel membrane proteins: the positive-outside rule, aromatic rescue, and strand registration prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Hairpin folding rates reflect mutations within and remote from the turn region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Hairpin folding dynamics: the cold-denatured state is predisposed for rapid refolding

1 reference

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14 September 2017

Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed beta-hairpin "trpzip2".

1 reference

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14 September 2017

Minimalist protein design: a beta-hairpin peptide that binds ssDNA.

1 reference

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14 September 2017

Understanding the key factors that control the rate of beta-hairpin folding

1 reference

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10 residue folded peptide designed by segment statistics.

1 reference

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Enhanced hairpin stability through loop design: the case of the protein G B1 domain hairpin

1 reference

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Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

1 reference

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14 September 2017

The geometry and efficacy of cation–π interactions in a diagonal position of a designed β‐hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

1 reference

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14 September 2017

Stability of cyclic beta-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair

1 reference

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14 September 2017

Quantifying beta-sheet stability by phage display

1 reference

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14 September 2017

Selective aromatic interactions in beta-hairpin peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

The Cationminus signpi Interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Tryptophan zippers: Stable, monomeric -hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

The turn sequence directs beta-strand alignment in designed beta-hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Cation-pi interactions in structural biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Folding dynamics and mechanism of beta-hairpin formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656586

14 September 2017

Crystallographic structure of the T domain-DNA complex of the Brachyury transcription factor

1 reference

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De novo protein design: fully automated sequence selection

1 reference

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Local interactions of aromatic residues in short peptides in aqueous solution: a combined database and energetic analysis

1 reference

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Conformational investigation of designed short linear peptides able to fold into beta-hairpin structures in aqueous solution

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

1 reference

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A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

1 reference

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Aromatic-aromatic interaction: a mechanism of protein structure stabilization

1 reference

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Aromatic-aromatic interactions and protein stability. Investigation by double-mutant cycles

1 reference

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Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

1 reference

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Prediction of the Secondary Structure of Proteins from their Amino Acid Sequence

1 reference

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14 September 2017

The environment of amide groups in protein-ligand complexes: H-bonds and beyond

1 reference

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An analysis of side chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen-bonded and non-hydrogen-bonded residue pairs.

1 reference

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A cross-strand Trp Trp pair stabilizes the hPin1 WW domain at the expense of function

1 reference

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NMR analysis of aromatic interactions in designed peptide beta-hairpins

1 reference

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Influence of N-methylation on a cation-pi interaction produces a remarkably stable beta-hairpin peptide

1 reference

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IR study of cross-strand coupling in a beta-hairpin peptide using isotopic labels

1 reference

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1 reference

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1 reference

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Structure and assembly of designed beta-hairpin peptides in crystals as models for beta-sheet aggregation.

1 reference

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The indole side chain of tryptophan as a versatile pi-donor

1 reference

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1 reference

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1 reference

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Sequence-dependent correction of random coil NMR chemical shifts

1 reference

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1 reference

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Thermodynamic Analysis of β-Hairpin-Forming Peptides from the Thermal Dependence of1H NMR Chemical Shifts

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

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Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Measurement of the β-sheet-forming propensities of amino acids

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Packing of aromatic rings against tryptophan residues in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arginine methylation in a beta-hairpin peptide: implications for Arg-pi interactions, DeltaCp(o), and the cold denatured state

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of side-chains in the cooperative beta-hairpin folding of the short C-terminal fragment derived from streptococcal protein G

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions of tryptophan side chains to the circular dichroism of globular proteins: exciton couplets and coupled oscillators

1 reference

https://pubmed.ncbi.nlm.nih.gov/18831035

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PROT.22240

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

ResearchGate publication ID

0 references

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