(Q37140709)

18 August 2017

Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers (English)

1 reference

18 August 2017

David Baker

3

0 references

author name string

Michael D Tyka

series ordinal

1

1 reference

18 August 2017

Kenneth Jung

series ordinal

2

1 reference

18 August 2017

language of work or name

1 reference

27 July 2012

1 reference

Journal of Computational Chemistry

18 August 2017

1 reference

18 August 2017

33

1 reference

18 August 2017

31

1 reference

18 August 2017

2483-2491

1 reference

Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Algorithm discovery by protein folding game players

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Alternate states of proteins revealed by detailed energy landscape mapping

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Structure prediction for CASP8 with all-atom refinement using Rosetta.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Refinement of protein structures into low-resolution density maps using rosetta

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Consistent blind protein structure generation from NMR chemical shift data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

High-resolution structure prediction and the crystallographic phase problem

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Scalable molecular dynamics with NAMD

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Toward high-resolution de novo structure prediction for small proteins.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Absolute comparison of simulated and experimental protein-folding dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Ab initio protein structure prediction of CASP III targets using ROSETTA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Genetic algorithms for protein structure prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Monte Carlo-minimization approach to the multiple-minima problem in protein folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Novel methods of sampling phase space in the simulation of biological systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Refined kinetic transition networks for the GB1 hairpin peptide

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Novel algorithms for searching conformational space.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Protein folding by restrained energy minimization and molecular dynamics

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760475

Replica-exchange molecular dynamics method for protein folding

3 September 2018

1 reference

Crossref

Stochastic Tunneling Approach for Global Minimization of Complex Potential Energy Landscapes

21 January 2018

1 reference

Crossref

21 January 2018

1 reference

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

21 January 2018

1 reference

Crossref

21 January 2018

Identifiers

DOI

10.1002/JCC.23069

1 reference

18 August 2017

journals/jcc/TykaJB12

1 reference

DBLP Dataset 2021-01-02

release_3fe2mjlsb5bwzn75lw7yl4iole

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3fe2mjlsb5bwzn75lw7yl4iole

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

18 August 2017

PubMed publication ID

22847521

1 reference