(Q37507897)

20 August 2017

Refinement of protein structures into low-resolution density maps using rosetta (English)

1 reference

20 August 2017

0 references

David Baker

5

0 references

Wah Chiu

series ordinal

4

object named as

Wah Chiu

1 reference

20 August 2017

Frank DiMaio

1

1 reference

20 August 2017

Michael D Tyka

series ordinal

2

1 reference

20 August 2017

Matthew L Baker

series ordinal

3

1 reference

20 August 2017

language of work or name

English

0 references

publication date

8 July 2009

1 reference

Journal of Molecular Biology

20 August 2017

1 reference

20 August 2017

392

1 reference

20 August 2017

181-190

1 reference

20 August 2017

1

1 reference

Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Iterative assembly of helical proteins by optimal hydrophobic packing.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

De novo backbone trace of GroEL from single particle electron cryomicroscopy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Protein structure fitting and refinement guided by cryo-EM density

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Identification of secondary structure elements in intermediate-resolution density maps

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Refinement of protein structures by iterative comparative modeling and CryoEM density fitting

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Toward high-resolution de novo structure prediction for small proteins.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Protein structure prediction servers at University College London

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Protein structure estimation from minimal restraints using Rosetta.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Comparative protein structure modeling by iterative alignment, model building and model assessment

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Bridging the information gap: computational tools for intermediate resolution structure interpretation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Native protein sequences are close to optimal for their structures

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

The crystal structure of bluetongue virus VP7

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Improvement of the GenTHREADER method for genomic fold recognition

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3899897

Modified Phased Translation Functions and their Application to Molecular-Fragment Location

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19596339

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2009.07.008

1 reference

20 August 2017

1 reference

20 August 2017

1 reference