(Q37199348)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

title

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

0 references

0 references

3

1 reference

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8 December 2019

2

D Thirumalai

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

author name string

J Pan

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

language of work or name

English

0 references

publication date

1 May 1999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

8 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

volume

96

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

page(s)

6149-6154

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

8 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Hierarchy and dynamics of RNA folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Denaturants can accelerate folding rates in a class of globular proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Kinetic pathway for folding of the Tetrahymena ribozyme revealed by three UV-inducible crosslinks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Three-state analysis of sperm whale apomyoglobin folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Fingerprinting the folding of a group I precursor RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Ribozymes: a distinct class of metalloenzymes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Metal ion requirements for sequence-specific endoribonuclease activity of the Tetrahymena ribozyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Visualizing the higher order folding of a catalytic RNA molecule

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Pathway-dependent refolding of E. coli 5S rRNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Conformational changes of transfer ribonucleic acid. Relaxation kinetics of the early melting transition of methionine transfer ribonucleic acid (Escherichia coli)

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Equilibrium binding of magnesium(II) by Escherichia coli tRNAfMet

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Thermodynamic analysis of transfer RNA unfolding

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

26 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Cooperative binding of magnesium to transfer ribonucleic acid studied by a fluorescent probe

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=26850

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

3 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Folding of RNA involves parallel pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

A magnesium ion core at the heart of a ribozyme domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

The time dependence of chemical modification reveals slow steps in the folding of a group I ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Kinetic intermediates in RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

The self-splicing RNA of Tetrahymena is trapped in a less active conformation by gel purification

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Kinetic intermediates trapped by native interactions in RNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

Cooperativity in protein folding: from lattice models with sidechains to real proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.11.6149

21 January 2018

Identifiers

DOI

10.1073/PNAS.96.11.6149

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10339556%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

1 reference