(Q37255376)

19 August 2017

1 reference

title

Analysis of branched nucleic acid structure using comparative gel electrophoresis (English)

1 reference

19 August 2017

0 references

David M J Lilley

1

1 reference

19 August 2017

publication date

1 February 2008

1 reference

Quarterly Reviews of Biophysics

19 August 2017

published in

1 reference

19 August 2017

volume

41

1 reference

19 August 2017

issue

1

1 reference

19 August 2017

page(s)

1-39

1 reference

Stereospecific effects determine the structure of a four-way DNA junction

19 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The junction-resolving enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Resolving the relationships of resolving enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). A nomenclature of junctions and branchpoints in nucleic acids. Recommendations 1994.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structures of helical junctions in nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Kinking of DNA and RNA by base bulges

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Understanding the anomalous electrophoresis of bent DNA molecules: a reptation model

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Topology of three-way junctions in folded RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Stability and structure of three-way DNA junctions containing unpaired nucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The global structure of the VS ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The kink-turn: a new RNA secondary structure motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

21 January 2018

Thymine dimers bend DNA

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Conformational flexibility of four-way junctions in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Effect of topological asymmetry on the electrophoretic mobility of branched DNA structures with and without single-base mismatches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Evidence for the existence of stable curvature of DNA in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The structural basis of Holliday junction resolution by T7 endonuclease I

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Severe axial bending of RNA induced by the U1A binding element present in the 3' untranslated region of the U1A mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Exchange between stacking conformers in a four-Way DNA junction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The kink-turn motif in RNA is dimorphic, and metal ion-dependent

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Distortion of DNA junctions imposed by the binding of resolving enzymes: a fluorescence study

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Electrophoretic mobility of linear and star-branched DNA in semidilute polymer solutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structural features of a three-stranded DNA junction containing a C-C junctional bulge

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Helical repeat and chirality effects on DNA gel electrophoretic mobility

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Theoretical studies of DNA during gel electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Reptation of a Polymer Chain in the Presence of Fixed Obstacles

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structural recognition between a four-way DNA junction and a resolving enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Three-dimensional structure of a hammerhead ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Extensive central disruption of a four-way junction on binding CCE1 resolving enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structure of a multisubunit complex that promotes DNA branch migration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Conformational flexibility of three-way DNA junctions containing unpaired nucleotides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The complex between a four-way DNA junction and T7 endonuclease I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The locus of sequence-directed and protein-induced DNA bending

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Geometry of a branched DNA structure in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Interaction of the resolving enzyme YDC2 with the four-way DNA junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of a DNA Holliday junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10-23 DNA enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of a group I ribozyme domain: principles of RNA packing

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of T4 endonuclease VII resolving a Holliday junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crossover isomer bias is the primary sequence-dependent property of immobilized Holliday junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The dynamic nature of the four-way junction of the hepatitis C virus IRES.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structural dynamics of individual Holliday junctions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structures of bulged three-way DNA junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The stereochemistry of a four-way DNA junction: a theoretical study

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

On the use of phasing experiments to measure helical repeat and bulge loop-associated twist in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

RNA folding and misfolding of the hammerhead ribozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Biochemical characterization of the kink-turn RNA motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Tertiary contacts distant from the active site prime a ribozyme for catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

NMR studies of DNA three-way junctions containing two unpaired thymidine bases: the influence of the sequence at the junction on the stability of the stacking conformers

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Bent helical structure in kinetoplast DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Mobility of DNA in gel electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Theory of gel electrophoresis of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Sequence effects on RNA bulge-induced helix bending and a conserved five-nucleotide bulge from the group I introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The role of specific 2'-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Mechanistic aspects of the DNA junction-resolving enzyme T7 endonuclease I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Crystal structure of an octameric RuvA-Holliday junction complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Fast Cleavage Kinetics of a Natural Hammerhead Ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

DNA bending induced by cruciform formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

RNA bulges and the helical periodicity of double-stranded RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

The chirality of a four-way helical junction in RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Exactly solvable reptation model

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Distortions induced in DNA by cis-platinum interstrand adducts

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Bulge-induced bends in RNA: quantification by transient electric birefringence

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Heterogeneity of minicircles in kinetoplast DNA of Leishmania tarentolae

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

The global folding of four-way helical junctions in RNA, including that in U1 snRNA

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Gel electrophoretic analysis of the geometry of a DNA four-way junction

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Structure of three-way DNA junctions. 2. Effects of extra bases and mismatches

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Effects of bulge composition and flanking sequence on the kinking of DNA by bulged bases

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Conformational differences between bulged pyrimidines (C-C) and purines (A-A, I-I) at the branch point of three-stranded DNA junctions

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

DNA bending by the bulge defect

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule?

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

A model for the solution structure of a branched, three-strand DNA complex

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Two inequivalent folding isomers of the three-way DNA junction with unpaired bases: sequence-dependence of the folded conformation

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

The structure of the Holliday junction, and its resolution

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

The structure of Bacillus subtilis RecU Holliday junction resolvase and its role in substrate selection and sequence-specific cleavage

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Structure of branched DNA molecules: gel retardation and atomic force microscopy studies

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Ionic interactions and the global conformations of the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Folding of the four-way RNA junction of the hairpin ribozyme

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Hybrid-hybrid matrix structural refinement of a DNA three-way junction from 3D NOESY-NOESY

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

The complete VS ribozyme in solution studied by small-angle X-ray scattering

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Mobility of a reptating polymer

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Refinement of the solution structure of a branched DNA three-way junction

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

Bulge loops used to measure the helical twist of RNA in solution

1 reference

https://api.crossref.org/works/10.1017%2FS0033583508004678

7 January 2021

10.1017/S0033583508004678

Identifiers

DOI

1 reference

19 August 2017

1 reference