(Q37297081)

English

A computational modeling and molecular dynamics study of the Michaelis complex of human protein Z-dependent protease inhibitor (ZPI) and factor Xa (FXa).

scientific article published on 27 January 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

A computational modeling and molecular dynamics study of the Michaelis complex of human protein Z-dependent protease inhibitor (ZPI) and factor Xa (FXa). (English)

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

computational biology

1 reference

based on heuristic

author name string

Vasudevan Chandrasekaran

1

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Chang Jun Lee

2

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Ping Lin

3

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Robert E Duke

4

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Lee G Pedersen

5

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

publication date

27 January 2009

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Journal of Molecular Modeling

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

15

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

8

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

897-911

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

https://scigraph.springernature.com/pub.10.1007/s00894-008-0444-3

0 references

Serpins in thrombosis, hemostasis and fibrinolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Protein Z/Z-dependent protease inhibitor (PZ/ZPI) anticoagulant system and thrombosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

An overview of the serpin superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Antithrombin-S195A factor Xa-heparin structure reveals the allosteric mechanism of antithrombin activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Identification of factor Xa residues critical for interaction with protein Z-dependent protease inhibitor: both active site and exosite interactions are required for inhibition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Mutations within the protein Z-dependent protease inhibitor gene are associated with venous thromboembolic disease: a new form of thrombophilia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Structure of the antithrombin-thrombin-heparin ternary complex reveals the antithrombotic mechanism of heparin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Serpin-ligand interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

How do proteins avoid becoming too stable? Biophysical studies into metastable proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Serpin structure, mechanism, and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Crystal structures of native and thrombin-complexed heparin cofactor II reveal a multistep allosteric mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Characterization of the protein Z-dependent protease inhibitor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Conformational changes in serpins: II. The mechanism of activation of antithrombin by heparin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Topography of a 2.0 Å structure of α1-antitrypsin reveals targets for rational drug design to prevent conformational disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

The protein Z-dependent protease inhibitor is a serpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Modelling protein docking using shape complementarity, electrostatics and biochemical information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

The 2.6 A structure of antithrombin indicates a conformational change at the heparin binding site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Glycosaminoglycan-mediated leuserpin-2/thrombin interaction. Structure-function relationships.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Elucidating the structural chemistry of glycosaminoglycan recognition by protein C inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Assessment of protein models with three-dimensional profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

6 September 2017

Protein Z-dependent protease inhibitor binds to the C-terminal domain of protein Z

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

14 September 2017

Homology modeling of NR2B modulatory domain of NMDA receptor and analysis of ifenprodil binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

26 June 2018

Probing the effect of point mutations at protein-protein interfaces with free energy calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

26 June 2018

Human plasma protein Z antigen: range in normal subjects and effect of warfarin therapy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

26 June 2018

The N-terminal acidic domain of heparin cofactor II mediates the inhibition of alpha-thrombin in the presence of glycosaminoglycans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

26 June 2018

Rapid estimation of relative protein-ligand binding affinities using a high-throughput version of MM-PBSA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

2 September 2018

Protein Z levels and central retinal vein or artery occlusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

2 September 2018

Down-regulation of factor IXa in the factor Xase complex by protein Z-dependent protease inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723763

2 September 2018

Reformable intramolecular cross-linking of the N-terminal domain of heparin cofactor II: effects on enzyme inhibition

1 reference

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2 September 2018

Converging free energy estimates: MM-PB(GB)SA studies on the protein-protein complex Ras-Raf.

1 reference

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2 September 2018

Protein Z-dependent regulation of coagulation.

1 reference

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2 September 2018

Frequency of protein Z deficiency in patients with ischaemic stroke.

1 reference

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2 September 2018

Identification of basic residues in the heparin-binding exosite of factor Xa critical for heparin and factor Va binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphisms of the protein Z-dependent protease inhibitor (ZPI) gene and the risk of venous thromboembolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations R67X and W303X of the protein Z-dependent protease inhibitor gene and venous thromboembolic disease: a case-control study in Italian subjects

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prospective study of polymorphisms of the protein Z-dependent protease inhibitor and risk of venous thromboembolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hybridization probe genotyping of the R67X nonsense polymorphism in the protein Z-dependent protease inhibitor reveals a new R67Q mutation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A proposed structural model of human protein Z

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein Z circulates in plasma in a complex with protein Z-dependent protease inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low protein Z levels and risk of ischemic stroke: differences by diabetic status and gender

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Continuum solvent studies of the stability of RNA hairpin loops and helices

1 reference

https://pubmed.ncbi.nlm.nih.gov/19172319

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00894-008-0444-3

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

ResearchGate publication ID

0 references

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