(Q37349376)

19 August 2017

Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution (English)

1 reference

19 August 2017

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2

Michael Levitt

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19 August 2017

Yu Xia

1

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language of work or name

English

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publication date

1 April 2004

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19 August 2017

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19 August 2017

55

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19 August 2017

107-114

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19 August 2017

1

1 reference

Roles of mutation and recombination in the evolution of protein thermodynamics

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Why are proteins so robust to site mutations?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Computational method to reduce the search space for directed protein evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

The fundamentals of protein folding: bringing together theory and experiment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Are protein folds atypical?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

The sequences of small proteins are not extensively optimized for rapid folding by natural selection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

How evolution makes proteins fold quickly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

From Levinthal to pathways to funnels

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

A new approach to the design of stable proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

6 September 2017

How does a protein fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Principles of protein folding--a perspective from simple exact models.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Natural Selection and the Concept of a Protein Space

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Selforganization of matter and the evolution of biological macromolecules

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Spin glasses and the statistical mechanics of protein folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

The neutral theory of molecular evolution: A review of recent evidence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Navigating the folding routes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Enumerating Designing Sequences in the HP Model

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Evolution of functionality in lattice proteins

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Pathways for protein folding: is a new view needed?

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

A global geometric framework for nonlinear dimensionality reduction

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Hiking in the energy landscape in sequence space: a bumpy road to good folders.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Evolution of model proteins on a foldability landscape.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745081

Implications of thermodynamics of protein folding for evolution of primary sequences

2 September 2018

1 reference

12 December 2020

The distribution of structures in evolving protein populations

1 reference

12 December 2020

Finding the right fold

1 reference

12 December 2020

Emergence of Preferred Structures in a Simple Model of Protein Folding

1 reference

12 December 2020

Shaping space: the possible and the attainable in RNA genotype-phenotype mapping

1 reference

12 December 2020

Modeling protein density of states: additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

1 reference

12 December 2020

Why are proteins marginally stable?

1 reference

12 December 2020

Are there pathways for protein folding?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PROT.10563

A lattice statistical mechanics model of the conformational and sequence spaces of proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PROT.10563

Continuity in evolution: on the nature of transitions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1002/PROT.10563

Identifiers

DOI

10.1002/PROT.10563

1 reference

19 August 2017

1 reference

19 August 2017

1 reference

PMCID

2745081