(Q37389545)

20 August 2017

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title

Bacterial chromosome-encoded small regulatory RNAs (English)

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20 August 2017

Sabine Brantl

1

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20 August 2017

publication date

1 February 2009

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20 August 2017

number of pages

19

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based on heuristic

inferred from page(s)

published in

Future Microbiology

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20 August 2017

volume

4

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20 August 2017

issue

1

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20 August 2017

page(s)

85-103

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https://api.crossref.org/works/10.2217%2F17460913.4.1.85

20 August 2017

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNAs involved in copy-number control and incompatibility of plasmid R1

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Antisense RNAs in bacteria and their genetic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Small untranslated RNA antitoxin in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

An internal antisense RNA regulates expression of the photosynthesis gene isiA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

GadY, a small-RNA regulator of acid response genes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Regulatory mechanisms employed by cis-encoded antisense RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

pT181 plasmid replication is regulated by a countertranscript-driven transcriptional attenuator

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RepR protein expression on plasmid pIP501 is controlled by an antisense RNA-mediated transcription attenuation mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Mechanism of binding of the antisense and target RNAs involved in the regulation of IncB plasmid replication

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Molecular analysis of RNAI control of repB translation in IncB plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNase III-dependent hydrolysis of lambda cII-O gene mRNA mediated by lambda OOP antisense RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Small RNAs in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Identification of novel small RNAs using comparative genomics and microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Small non-coding RNAs and the bacterial outer membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNA expression analysis using an antisense Bacillus subtilis genome array

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Identification of small Hfq-binding RNAs in Listeria monocytogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Regulation of RpoS by a novel small RNA: the characterization of RprA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

An antisense RNA inhibits translation by competing with standby ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Regulation and mode of action of the second small RNA activator of RpoS translation, RprA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Experimental approaches to identify non-coding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Target identification of small noncoding RNAs in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Hfq structure, function and ligand binding

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Predicted structure and phyletic distribution of the RNA-binding protein Hfq.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The bacterial Sm-like protein Hfq: a key player in RNA transactions

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Global analysis of small RNA and mRNA targets of Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The C-terminal domain of Escherichia coli Hfq is required for regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

FinO is an RNA chaperone that facilitates sense-antisense RNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Antisense-RNA mediated transcriptional attenuation: importance of a U-turn loop structure in the target RNA of plasmid pIP501 for efficient inhibition by the antisense RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Indole signalling contributes to the stable maintenance of Escherichia coli multicopy plasmids.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

6S RNA regulates E. coli RNA polymerase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

6S RNA: a small RNA regulator of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

CsrB sRNA family: sequestration of RNA-binding regulatory proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A novel sRNA component of the carbon storage regulatory system of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Studies on the mechanism of RNAi-dependent heterochromatin assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Antisense RNA-mediated transcriptional attenuation in plasmid pIP501: the simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

Factor Fraction required for the Synthesis of Bacteriophage Qβ-RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17460913.4.1.85

21 January 2018

Identifiers

DOI

10.2217/17460913.4.1.85

1 reference

20 August 2017

1 reference