(Q37438825)

English

The hydrolysis activity of adenosine triphosphate in myosin: a theoretical analysis of anomeric effects and the nature of the transition state

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

The hydrolysis activity of adenosine triphosphate in myosin: a theoretical analysis of anomeric effects and the nature of the transition state (English)

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

adenosine triphosphate

0 references

author name string

Yang Yang

1

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Qiang Cui

2

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

language of work or name

0 references

publication date

1 November 2009

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

number of pages

8

1 reference

based on heuristic

inferred from page(s)

Journal of Physical Chemistry A

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

113

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

45

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

12439-12446

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

QM/MM Minimum Free Energy Path: Methodology and Application to Triosephosphate Isomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Extensive conformational transitions are required to turn on ATP hydrolysis in myosin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Infrared spectroscopy of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Mechanism of the myosin catalyzed hydrolysis of ATP as rationalized by molecular modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Interactions between phosphate and water in solution: a natural bond orbital based analysis in a QM/MM framework

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Advances in methods and algorithms in a modern quantum chemistry program package.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Enzymatic mechanisms of phosphate and sulfate transfer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Electrostatic basis for enzyme catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

The molecular mechanism of muscle contraction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Early stages of energy transduction by myosin: roles of Arg in switch I, of Glu in switch II, and of the salt-bridge between them

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Monitoring the GAP catalyzed H-Ras GTPase reaction at atomic resolution in real time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

X-ray structures of the apo and MgATP-bound states of Dictyostelium discoideum myosin motor domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Structural mechanism of muscle contraction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

The way things move: looking under the hood of molecular motor proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Mechanistic alternatives in phosphate monoester hydrolysis: what conclusions can be drawn from available experimental data?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Density-functional exchange-energy approximation with correct asymptotic behavior

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

X-ray structures of the MgADP, MgATPgammaS, and MgAMPPNP complexes of the Dictyostelium discoideum myosin motor domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

The structural basis of the myosin ATPase activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

X-ray structure of the magnesium(II).ADP.vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Kinetic Analysis of ATPase Mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

23 August 2017

Theoretical IR spectroscopy based on QM/MM calculations provides changes in charge distribution, bond lengths, and bond angles of the GTP ligand induced by the Ras-protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

14 September 2017

Raman difference spectroscopic studies of the myosin S1.MgADP.vanadate complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

26 June 2018

Associative versus dissociative mechanisms of phosphate monoester hydrolysis: on the interpretation of activation entropies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Role of the arginine finger in Ras.RasGAP revealed by QM/MM calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Insights into the chemomechanical coupling of the myosin motor from simulation of its ATP hydrolysis mechanism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Mechanism of triphosphate hydrolysis in aqueous solution: QM/MM simulations in water clusters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Generalized anomeric interpretation of the "high-energy" N-P bond in N-methyl-N'-phosphorylguanidine: importance of reinforcing stereoelectronic effects in "high-energy" phosphoester bonds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

QM/MM modeling the Ras-GAP catalyzed hydrolysis of guanosine triphosphate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

P-O bond destabilization accelerates phosphoenzyme hydrolysis of sarcoplasmic reticulum Ca2+ -ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

PDDG/PM3 and PDDG/MNDO: improved semiempirical methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2783400

2 September 2018

Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping the transition state for ATP hydrolysis: implications for enzymatic catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A transition path sampling study of the reaction catalyzed by the enzyme chorismate mutase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Muscle contraction and free energy transduction in biological systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pyruvate kinase: is the mechanism of phospho transfer associative or dissociative?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anomeric effect in "high energy" phosphate bonds. Selective destabilization of the scissile bond and modulation of the exothermicity of hydrolysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19534504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/JP902949F

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q37438825&oldid=1773280193"