(Q40334259)

English

Theoretical IR spectroscopy based on QM/MM calculations provides changes in charge distribution, bond lengths, and bond angles of the GTP ligand induced by the Ras-protein

scientific article published on April 2005

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scholarly article

1 reference

Europe PubMed Central

19 September 2017

Theoretical IR spectroscopy based on QM/MM calculations provides changes in charge distribution, bond lengths, and bond angles of the GTP ligand induced by the Ras-protein (English)

1 reference

Europe PubMed Central

19 September 2017

3

object named as

Klaus Gerwert

1 reference

Europe PubMed Central

19 September 2017

Jürgen Schlitter

2

object named as

Jürgen Schlitter

1 reference

Europe PubMed Central

19 September 2017

author name string

Marco Klähn

1

1 reference

Europe PubMed Central

19 September 2017

language of work or name

0 references

publication date

1 April 2005

1 reference

Europe PubMed Central

19 September 2017

number of pages

16

1 reference

based on heuristic

inferred from page(s)

Biophysical Journal

1 reference

Europe PubMed Central

19 September 2017

88

1 reference

Europe PubMed Central

19 September 2017

6

1 reference

Europe PubMed Central

19 September 2017

3829-3844

1 reference

Europe PubMed Central

19 September 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

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22 September 2017

Proteins in action monitored by time-resolved FTIR spectroscopy

1 reference

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22 September 2017

Proton binding within a membrane protein by a protonated water cluster

1 reference

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22 September 2017

ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase

1 reference

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22 September 2017

Kinetic isotope effects in Ras-catalyzed GTP hydrolysis: evidence for a loose transition state

1 reference

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22 September 2017

The GTPase-activating protein Rap1GAP uses a catalytic asparagine

1 reference

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22 September 2017

Why does the Ras switch "break" by oncogenic mutations?

1 reference

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22 September 2017

The guanine nucleotide-binding switch in three dimensions

1 reference

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22 September 2017

pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin

1 reference

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Monitoring the GAP catalyzed H-Ras GTPase reaction at atomic resolution in real time

1 reference

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22 September 2017

Ab initio study of the role of lysine 16 for the molecular switching mechanism of Ras protein p21.

1 reference

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22 September 2017

The pre-hydrolysis state of p21(ras) in complex with GTP: new insights into the role of water molecules in the GTP hydrolysis reaction of ras-like proteins

1 reference

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Unified Approach for Molecular Dynamics and Density-Functional Theory

1 reference

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Density-functional approximation for the correlation energy of the inhomogeneous electron gas

1 reference

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22 September 2017

Density-functional exchange-energy approximation with correct asymptotic behavior

1 reference

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22 September 2017

Ras-catalyzed hydrolysis of GTP: a new perspective from model studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

22 September 2017

Three-dimensional structures and properties of a transforming and a nontransforming glycine-12 mutant of p21H-ras

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

22 September 2017

Signal transduction pathways involving Ras. Mini review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

22 September 2017

1 reference

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22 September 2017

Amino-acid substitutions at codon 13 of the N-ras oncogene in human acute myeloid leukaemia

1 reference

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22 September 2017

ras oncogenes in human cancer: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

22 September 2017

Three-dimensional structures of H-ras p21 mutants: molecular basis for their inability to function as signal switch molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

22 September 2017

How does GAP catalyze the GTPase reaction of Ras? A computer simulation study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

15 June 2018

Time-resolved FTIR studies of the GTPase reaction of H-ras p21 reveal a key role for the beta-phosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

15 June 2018

The interaction of Ras with GTPase-activating proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

15 June 2018

Mechanistic analysis of the observed linear free energy relationships in p21ras and related systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

15 June 2018

Fourier transform infrared spectroscopy on the Rap.RapGAP reaction, GTPase activation without an arginine finger

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

20 August 2018

Quantum chemical modeling of the GTP hydrolysis by the RAS-GAP protein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

20 August 2018

Environmental effects on phosphoryl group bonding probed by vibrational spectroscopy: implications for understanding phosphoryl transfer and enzymatic catalysis

1 reference

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20 August 2018

Enzymatic GTP hydrolysis: insights from an ab initio molecular dynamics study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

20 August 2018

Combined QM/MM study of the opsin shift in bacteriorhodopsin

1 reference

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20 August 2018

Vibrational structure of GDP and GTP bound to RAS: an isotope-edited FTIR study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305617

20 August 2018

Ras catalyzes GTP hydrolysis by shifting negative charges from gamma- to beta-phosphate as revealed by time-resolved FTIR difference spectroscopy

1 reference

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20 August 2018

Role of glutamine-61 in the hydrolysis of GTP by p21H-ras: an experimental and theoretical study.

1 reference

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20 August 2018

Substrate and Product Structural Requirements for Binding of Nucleotides to H-ras p21: The Mechanism of Discrimination between Guanosine and Adenosine Nucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/15805169

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assigning protonation patterns in water networks in bacteriorhodopsin based on computed IR spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/15805169

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Theoretical calculations of acid-dissociation constants of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15805169

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Yeast and mammalian ras proteins have conserved biochemical properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/15805169

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Vibrational study of phosphate modes in GDP and GTP and their interaction with magnesium in aqueous solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15805169

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.104.058644

1 reference

Europe PubMed Central

19 September 2017

1 reference

Europe PubMed Central

19 September 2017

1 reference

Europe PubMed Central

19 September 2017

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