(Q37456914)

20 August 2017

Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer (English)

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20 August 2017

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10

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20 August 2017

Matthew W Conklin

4

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Thomas R. Mackie

9

object named as

Thomas R Mackie

1 reference

20 August 2017

Jeremy S Bredfeldt

1

1 reference

20 August 2017

Yuming Liu

2

1 reference

20 August 2017

Carolyn A Pehlke

3

1 reference

20 August 2017

Joseph M Szulczewski

5

1 reference

20 August 2017

David R Inman

6

1 reference

20 August 2017

Patricia J Keely

7

1 reference

20 August 2017

Robert D Nowak

8

1 reference

20 August 2017

1 January 2014

1 reference

Journal of Biomedical Optics

20 August 2017

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20 August 2017

19

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20 August 2017

1

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20 August 2017

16007

1 reference

describes a project that uses

20 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3886580/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Analysis of second-harmonic-generation microscopy in a mouse model of ovarian carcinoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Statistical tracking of tree-like tubular structures with efficient branching detection in 3D medical image data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Fiji: an open-source platform for biological-image analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Aligned collagen is a prognostic signature for survival in human breast carcinoma

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Tubular surface segmentation for extracting anatomical structures from medical imagery

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Alterations of the extracellular matrix in ovarian cancer studied by Second Harmonic Generation imaging microscopy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Shining new light on 3D cell motility and the metastatic process

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Collagen density promotes mammary tumor initiation and progression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

The curvelet transform for image denoising.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Collagen reorganization at the tumor-stromal interface facilitates local invasion

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Noninvasive assessment of collagen gel microstructure and mechanics using multiphoton microscopy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Probing the microenvironment of mammary tumors using multiphoton microscopy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Intravital imaging of cell movement in tumours

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Nonlinear magic: multiphoton microscopy in the biosciences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

3-dimensional imaging of collagen using second harmonic generation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Polarization-modulated second harmonic generation in collagen

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Polarization-dependent optical second-harmonic imaging of a rat-tail tendon.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

High-resolution nonlinear optical imaging of live cells by second harmonic generation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Connective tissue polarity. Optical second-harmonic microscopy, crossed-beam summation, and small-angle scattering in rat-tail tendon

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gels

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Intravital imaging of metastatic behavior through a mammary imaging window.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Nonlinear optical imaging of cellular processes in breast cancer

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Dual tree complex wavelet transform based denoising of optical microscopy images

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Hierarchical model of fibrillar collagen organization for interpreting the second-order susceptibility tensors in biological tissue

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Imaging and 3D morphological analysis of collagen fibrils.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Characterization of collagen fibers by means of texture analysis of second harmonic generation images using orientation-dependent gray level co-occurrence matrix method.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

This is SPIRAL-TAP: Sparse Poisson Intensity Reconstruction ALgorithms--theory and practice

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

3-D image pre-processing algorithms for improved automated tracing of neuronal arbors.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Quantification of collagen organization using fractal dimensions and Fourier transforms

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Multiple hypothesis template tracking of small 3D vessel structures.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Fluorescence lifetime imaging of endogenous fluorophores in histopathology sections reveals differences between normal and tumor epithelium in carcinoma in situ of the breast

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

An algorithm for extracting the network geometry of three-dimensional collagen gels.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Analysis of orientations of collagen fibers by novel fiber-tracking software.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Automated quantification and reconstruction of collagen matrix from 3D confocal datasets

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3886580

Effects of axial field components on second harmonic generation microscopy

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24407500

12 December 2020

inferred from PubMed ID database lookup

Analysis of collagen fibre shape changes in breast cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24407500

12 December 2020

inferred from PubMed ID database lookup

Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24407500

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1117/1.JBO.19.1.016007

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

24407500

1 reference