(Q37556690)

21 August 2017

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center (English)

1 reference

21 August 2017

0 references

1 reference

Andrew Warren

25

0 references

Ross Overbeek

20

object named as

Ross Overbeek

1 reference

21 August 2017

Alice R Wattam

1

1 reference

21 August 2017

James J Davis

2

1 reference

21 August 2017

Rida Assaf

3

1 reference

21 August 2017

Sébastien Boisvert

4

1 reference

21 August 2017

Thomas Brettin

5

1 reference

21 August 2017

Christopher Bun

6

1 reference

21 August 2017

Neal Conrad

7

1 reference

21 August 2017

Emily M Dietrich

8

1 reference

21 August 2017

Terry Disz

9

1 reference

21 August 2017

Joseph L Gabbard

10

1 reference

21 August 2017

Svetlana Gerdes

11

1 reference

21 August 2017

Christopher S Henry

12

1 reference

21 August 2017

Ronald W Kenyon

13

1 reference

21 August 2017

Dustin Machi

14

1 reference

21 August 2017

Chunhong Mao

15

1 reference

21 August 2017

Eric K Nordberg

16

1 reference

21 August 2017

Gary J Olsen

17

1 reference

21 August 2017

Daniel E Murphy-Olson

18

1 reference

21 August 2017

Robert Olson

19

1 reference

21 August 2017

Bruce Parrello

21

1 reference

21 August 2017

Gordon D Pusch

22

1 reference

21 August 2017

Maulik Shukla

23

1 reference

21 August 2017

Veronika Vonstein

24

1 reference

21 August 2017

Fangfang Xia

26

1 reference

21 August 2017

Hyunseung Yoo

27

1 reference

21 August 2017

Rick L Stevens

28

1 reference

21 August 2017

language of work or name

English

0 references

publication date

29 November 2016

1 reference

21 August 2017

Nucleic Acids Research

1 reference

21 August 2017

45

1 reference

21 August 2017

D1

1 reference

21 August 2017

D535-D542

1 reference

Antimicrobial Resistance Prediction in PATRIC and RAST.

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

PacBio Sequencing and Its Applications

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

KEGG as a reference resource for gene and protein annotation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Type material in the NCBI Taxonomy Database.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Curation, integration and visualization of bacterial virulence factors in PATRIC

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

PATRIC, the bacterial bioinformatics database and analysis resource

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

DrugBank 4.0: shedding new light on drug metabolism

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Computational analysis of bacterial RNA-Seq data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The comprehensive antibiotic resistance database.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Fast gapped-read alignment with Bowtie 2

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The Sequence Read Archive: explosive growth of sequencing data.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The European Nucleotide Archive

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

High-throughput generation, optimization and analysis of genome-scale metabolic models

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Incorporating sequence quality data into alignment improves DNA read mapping

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

FIGfams: yet another set of protein families

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The Sequence Alignment/Map format and SAMtools

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Fast and accurate short read alignment with Burrows-Wheeler transform

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The potential and challenges of nanopore sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

NCBI BLAST: a better web interface

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The RAST Server: rapid annotations using subsystems technology

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

ARDB--Antibiotic Resistance Genes Database

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Assessing the performance of the Oxford Nanopore Technologies MinION.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

QUAST: quality assessment tool for genome assemblies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210524

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1017

De novo genome assembly: what every biologist should know

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1017

The complex transcriptional landscape of the anucleate human platelet

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1017

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW1017

1 reference

journals/nar/WattamDABBBCDDG17

21 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

21 August 2017

1 reference