(Q37591415)

English

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

scientific article published on 11 February 2014

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scholarly article

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Europe PubMed Central

PMC publication ID

21 August 2017

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia (English)

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Europe PubMed Central

PMC publication ID

21 August 2017

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microRNA expression

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David Robert Mole

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Europe PubMed Central

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21 August 2017

5

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Europe PubMed Central

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21 August 2017

9

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Europe PubMed Central

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21 August 2017

Anton J. Enright

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21 August 2017

José Afonso Guerra-assunção

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José Afonso Guerra-Assunção

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Hani Choudhry

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Francesca M. Buffa

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Francesca M Buffa

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Ya-Min Tian

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Europe PubMed Central

21 August 2017

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author name string

Carme Camps

1

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Europe PubMed Central

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21 August 2017

Harpreet K Saini

2

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Europe PubMed Central

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21 August 2017

Artemis G Hatzigeorgiou

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Europe PubMed Central

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21 August 2017

Jiannis Ragoussis

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21 August 2017

publication date

11 February 2014

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Europe PubMed Central

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21 August 2017

Molecular Cancer

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Europe PubMed Central

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21 August 2017

13

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Europe PubMed Central

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21 August 2017

28

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Europe PubMed Central

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21 August 2017

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limma

Limma

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3928101

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Extensive regulation of the non-coding transcriptome by hypoxia: role of HIF in releasing paused RNApol2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928101

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1 reference

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EGFR modulates microRNA maturation in response to hypoxia through phosphorylation of AGO2.

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DDX5 regulates DNA replication and is required for cell proliferation in a subset of breast cancer cells

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Functional importance of Dicer protein in the adaptive cellular response to hypoxia

1 reference

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MicroRNA profiling: approaches and considerations

1 reference

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Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs.

1 reference

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23 August 2017

1 reference

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Hypoxia potentiates microRNA-mediated gene silencing through posttranslational modification of Argonaute2.

1 reference

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23 August 2017

High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq.

1 reference

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23 August 2017

miRBase: integrating microRNA annotation and deep-sequencing data

1 reference

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Negative regulation of the tumor suppressor p53 gene by microRNAs.

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MicroRNA-27a Indirectly Regulates Estrogen Receptor {alpha} Expression and Hormone Responsiveness in MCF-7 Breast Cancer Cells

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MicroRNA-210: a unique and pleiotropic hypoxamir

1 reference

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Dynamic changes in lung microRNA profiles during the development of pulmonary hypertension due to chronic hypoxia and monocrotaline

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928101

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Regulation of HIF-1alpha and VEGF by miR-20b tunes tumor cells to adapt to the alteration of oxygen concentration.

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23 August 2017

Genome-wide association of hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha DNA binding with expression profiling of hypoxia-inducible transcripts

1 reference

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Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

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MicroRNA regulation of DNA repair gene expression in hypoxic stress

1 reference

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The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease

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Hypoxia induces microRNA miR-210 in vitro and in vivo ephrin-A3 and neuronal pentraxin 1 are potentially regulated by miR-210.

1 reference

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hsa-miR-210 Is induced by hypoxia and is an independent prognostic factor in breast cancer

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The oncogenic microRNA-27a targets genes that regulate specificity protein transcription factors and the G2-M checkpoint in MDA-MB-231 breast cancer cells.

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1 reference

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Regulation of microRNA expression: the hypoxic component.

1 reference

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1 reference

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928101

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928101

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928101

1 September 2018

OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences

1 reference

https://api.crossref.org/works/10.1186%2F1476-4598-13-28

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1 reference

https://api.crossref.org/works/10.1186%2F1476-4598-13-28

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1 reference

https://api.crossref.org/works/10.1186%2F1476-4598-13-28

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24517586

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

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inferred from PubMed ID database lookup

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1476-4598-13-28

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

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PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PubMed publication ID

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Europe PubMed Central

PMC publication ID

21 August 2017

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