(Q37606469)

21 August 2017

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title

Immunoinformatics and modeling perspective of T cell epitope-based cancer immunotherapy: a holistic picture (English)

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21 August 2017

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Seema Mishra

1

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21 August 2017

Subhata Sinha

series ordinal

2

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21 August 2017

publication date

1 December 2009

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Journal of Biomolecular Structure and Dynamics

21 August 2017

published in

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21 August 2017

volume

27

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21 August 2017

issue

3

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21 August 2017

page(s)

293-306

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Less yin, more yang: confronting the barriers to cancer immunotherapy

21 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Improving antitumor immune responses by circumventing immunoregulatory cells and mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

T-cell responses of vaccinated cancer patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Vaccination with an NY-ESO-1 peptide of HLA class I/II specificities induces integrated humoral and T cell responses in ovarian cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Identification of immunodominant regions among promiscuous HLA-DR-restricted CD4+ T-cell epitopes on the tumor antigen MAGE-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Identification of a highly immunogenic HLA-A*01-binding T cell epitope of WT1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Recognition of prostate and melanoma tumor cells by six-transmembrane epithelial antigen of prostate-specific helper T lymphocytes in a human leukocyte antigen class II-restricted manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Universally immunogenic T cell epitopes: promiscuous binding to human MHC class II and promiscuous recognition by T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

MHC ligands and peptide motifs: first listing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

ProPred1: prediction of promiscuous MHC Class-I binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

ProPred: prediction of HLA-DR binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

MHCPred 2.0: an updated quantitative T-cell epitope prediction server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Prediction of promiscuous and high-affinity mutated MHC binders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Structure-based prediction of MHC-peptide association: algorithm comparison and application to cancer vaccine design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Prediction of proteasome cleavage motifs by neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Structural prediction of peptides bound to MHC class I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

EpiJen: a server for multistep T cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Immunoinformatics comes of age

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

The immune epitope database and analysis resource: from vision to blueprint

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

IMGT, the international ImMunoGeneTics information system

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

MHCBN: a comprehensive database of MHC binding and non-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Leveraging information across HLA alleles/supertypes improves epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Immunologic and clinical outcomes of a randomized phase II trial of two multipeptide vaccines for melanoma in the adjuvant setting

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

The cleavage preference of the proteasome governs the yield of antigenic peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

The peptide-binding motif for the human transporter associated with antigen processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

T cell receptor-MHC interactions up close

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Diversity and recognition efficiency of T cell responses to cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Structural features of peptide analogs of human histocompatibility leukocyte antigen class I epitopes that are more potent and immunogenic than wild-type peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

An altered peptide ligand for naïve cytotoxic T lymphocyte epitope of TRP-2(180-188) enhanced immunogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Structural and kinetic basis for heightened immunogenicity of T cell vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Phenotypic and functional maturation of tumor antigen-reactive CD8+ T lymphocytes in patients undergoing multiple course peptide vaccination

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Agonist peptide from a cytotoxic t-lymphocyte epitope of human carcinoembryonic antigen stimulates production of tc1-type cytokines and increases tyrosine phosphorylation more efficiently than cognate peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Rational design of nonnatural peptides as high-affinity ligands for the HLA-B*2705 human leukocyte antigen

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Identification of noncanonical melanoma-associated T cell epitopes for cancer immunotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Modeling the interactions of a peptide-major histocompatibility class I ligand with its receptors. I. Recognition by two alpha beta T cell receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

An HLA-B27 polymorphism (B*2710) that is critical for T-cell recognition has limited effects on peptide specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Molecular dynamics and structure-based drug design for predicting non-natural nonapeptide binding to a class I MHC protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Identification and characterization of ErbB-3-binding protein-1 as a target for immunotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Peptide vaccines against cancer, infectious diseases, and conception

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Enhanced immunogenicity of CTL antigens through mutation of the CD8 binding MHC class I invariant region

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Peptide epitopes from the Wilms' tumor 1 oncoprotein stimulate CD4+ and CD8+ T cells that recognize and kill human malignant mesothelioma tumor cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Producing nature's gene-chips: the generation of peptides for display by MHC class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Alternative translational products and cryptic T cell epitopes: expecting the unexpected

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A polyepitope DNA vaccine targeted to Her-2/ErbB-2 elicits a broad range of human and murine CTL effectors to protect against tumor challenge

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Immune recognition of a human renal cancer antigen through post-translational protein splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Tumor-specific human CD4+ regulatory T cells and their ligands: implications for immunotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Recognition of a new ARTC1 peptide ligand uniquely expressed in tumor cells by antigen-specific CD4+ regulatory T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Cancer immunotherapy: avoiding the road to perdition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Distorted relation between mRNA copy number and corresponding major histocompatibility complex ligand density on the cell surface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A computer model of cellular interactions in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

A model for simulating cognate recognition and response in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Design and implementation of an immune system simulator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

Simulating Epstein-Barr virus infection with C-ImmSim.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

From genome to vaccine—new immunoinformatics tools for vaccine design

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2009.10507317

10.1080/07391102.2009.10507317

21 January 2018

Identifiers

DOI

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21 August 2017

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