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UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicing.
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scholarly article
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Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
title
UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicing
(English)
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stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
main subject
RNA sequencing
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inferred from title
RNA-Seq
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author
Jian Ma
series ordinal
3
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stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
author name string
Paul D Burns
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
Yang Li
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
Mark Borodovsky
series ordinal
4
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Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
language of work or name
English
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publication date
19 November 2013
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
published in
Nucleic Acids Research
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Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
volume
42
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
issue
4
1 reference
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Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
page(s)
e25
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stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
copyright license
Creative Commons Attribution 3.0 Unported
start time
10 November 2016
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
TrueSight: a new algorithm for splice junction detection using RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
The genome of woodland strawberry (Fragaria vesca)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
The Drosophila melanogaster transcriptome by paired-end RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Noisy splicing drives mRNA isoform diversity in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Fast and SNP-tolerant detection of complex variants and splicing in short reads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Stochastic noise in splicing machinery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Fast and accurate short read alignment with Burrows-Wheeler transform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
TopHat: discovering splice junctions with RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Mapping short DNA sequencing reads and calling variants using mapping quality scores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
SOAP: short oligonucleotide alignment program
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Gene identification in novel eukaryotic genomes by self-training algorithm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
BLAT—The BLAST-Like Alignment Tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
23 August 2017
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3936741
retrieved
14 September 2017
Asymptotic Behaviors of Support Vector Machines with Gaussian Kernel
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24259430
retrieved
12 December 2020
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inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKT1141
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
PMC publication ID
3936741
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
PubMed publication ID
24259430
1 reference
stated in
Europe PubMed Central
PMC publication ID
3936741
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24259430%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 March 2020
ResearchGate publication ID
258825156
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