(Q33741801)

29 July 2017

title

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene (English)

1 reference

29 July 2017

0 references

5

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29 July 2017

4

Jennifer Harrow

0 references

Adam Frankish

series ordinal

2

object named as

Adam Frankish

1 reference

29 July 2017

1

Mar Gonzàlez-Porta

1 reference

29 July 2017

Johan Rung

3

1 reference

29 July 2017

publication date

1 July 2013

1 reference

29 July 2017

1 reference

29 July 2017

volume

14

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29 July 2017

issue

7

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29 July 2017

page(s)

R70

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Tumor-specific isoform switch of the fibroblast growth factor receptor 2 underlies the mesenchymal and malignant phenotypes of clear cell renal cell carcinomas

29 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Perturbation of myelin basic protein (Mbp) splice variant expression in developing rat cerebellum following perinatal exposure to methylmercury

21 June 2018

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Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

21 June 2018

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Detecting differential usage of exons from RNA-seq data

21 June 2018

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Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

21 June 2018

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A quantitative atlas of polyadenylation in five mammals

21 June 2018

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Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

21 June 2018

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

21 June 2018

1 reference

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Estimation of alternative splicing variability in human populations

21 June 2018

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 June 2018

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21 June 2018

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Cell-to-cell variability of alternative RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Defining the transcriptome and proteome in three functionally different human cell lines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Noisy splicing drives mRNA isoform diversity in human cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Analysis and design of RNA sequencing experiments for identifying isoform regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The European Nucleotide Archive

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The adaptive significance of unproductive alternative splicing in primates.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Global regulation of alternative splicing during myogenic differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

A global map of human gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Expansion of the eukaryotic proteome by alternative splicing

21 June 2018

1 reference

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RNA processing and its regulation: global insights into biological networks

21 June 2018

1 reference

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

21 June 2018

1 reference

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Estimating accuracy of RNA-Seq and microarrays with proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

mRNA-Seq whole-transcriptome analysis of a single cell

21 June 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Alternative isoform regulation in human tissue transcriptomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The coupling of alternative splicing and nonsense-mediated mRNA decay.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Cytoplasmic BK(Ca) channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Computational analysis of splicing errors and mutations in human transcripts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Genetic basis of proteome variation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The implications of alternative splicing in the ENCODE protein complement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

An intron with a constitutive transport element is retained in a Tap messenger RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Developmental regulation of a proinsulin messenger RNA generated by intron retention.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Quality control of messenger ribonucleoprotein particles in the nucleus and at the pore

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Function of alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

An unappreciated role for RNA surveillance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Computational detection and location of transcription start sites in mammalian genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Tissue-specific alternative splicing remodels protein-protein interaction networks

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-7-R70

Negative control contributes to an extensive program of meiotic splicing in fission yeast.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-7-R70

Introns within ribosomal protein genes regulate the production and function of yeast ribosomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23815980

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-7-R70

1 reference

29 July 2017

1 reference

29 July 2017

1 reference